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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaggcataatttctggatacaatgctcttctgctatttgcaatctaattagcacataacaatcaattgatgggtaatctcatattgttttttcctagAACTTCGACAAGATTACACACCGTGTTCAGAGTAAAAACAAGGATCAG

Basic information

species Zea mays
transcript GRMZM2G152319_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18165901|gb|BM335740.1|BM335740
EST:     CACACCAAGAGGAGGAGAATTTCTTCAATGCGCTGCGGCAAGTAGGGAAA                         AACTTCGACAAGATTACACACCGTGTTCAGAGTAAAAACAAGGATCAG
genomic: CACACCAAGAGGAGGAGAATTTCTTCAATGCACTGCGGCAAGTAGGGAAAgtaagaggca ... tttttcctagAACTTCGACAAGATTACACACCGTGTTCAGAGTAAAAACAAGGATCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaattagcacataacaatcaattgatgggtaatctcatattgttttttcctagAACTTCGACAAGATTACACACCGTGTTCAGAGTAAAAACAAGGATCAG
                                       tattgttttttcct  CT-rich tract
                                    tcatattgtttttt  TA-rich tract