Sequence
atgc intronic sequence ATGC exonic sequencegtaagagaactcgaagattttctaatcaatgagtgcatgtatgcaagagttggatgtttccaacgtaagagaactcgaagattatgcatgttcatgtagGGTATTGTCAGAGGCAAACTGGATCAACTGAGAAGATGCTTTGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G152100_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g30840.4 (Oryza sativa), 3'ss of exon 3
gtaagagaactcgaagattttctaatcaatgagtgcatgtatgcaagagttggatgtttccaacg-taagagaactcgaagattatgcatgttcatgta-gGGTATTGTCAGA-GGCAAACTGGATCAACTGAGAAGATGCTTTGAA----------------------------------------------
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-caagttcatgtagtattatcttttaccttaaaactctgt-tctatgtttttgctttagacaatactaaatgtgcttggtttttattatcatttctattcagGTGCTACCATATGATCAACTCATGCAAG-AATTGGATGTTTCCAATGTAAGAGAACTCGAAGATTTCCTCATCAATGAGTGCATGTACTCG
upper sequence: GRMZM2G152100_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g30840.4 (Oryza sativa), 3'ss of exon 3
gtaagagaactcgaagattttctaatcaatgagtgcatgtatgcaagagttggatgtttccaacg-taagagaactcgaagattatgcatgttcatgta-gGGTATTGTCAGA-GGCAAACTGGATCAACTGAGAAGATGCTTTGAA----------------------------------------------
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-caagttcatgtagtattatcttttaccttaaaactctgt-tctatgtttttgctttagacaatactaaatgtgcttggtttttattatcatttctattcagGTGCTACCATATGATCAACTCATGCAAG-AATTGGATGTTTCCAATGTAAGAGAACTCGAAGATTTCCTCATCAATGAGTGCATGTACTCG
upper sequence: GRMZM2G152100_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv15s0021g01580.t01 (Vitis vinifera), 3'ss of exon 3
--gtaagagaactcgaagattttctaatcaatgagtgcatgtatgcaagagttggatgtttccaacgtaagagaactcgaagattatgcatgttcatgtagGGTATTGTCAGAGGCAAACTGGATCAACTGAGAAGATGCTTTGAA----------------------------------------------
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tccattttttttttttccattttgcttccaccaaattcctgattatgacagttgcaaacttgcatgattttctatgactaattttttgt-tacttgcccagGTACTCCCCTATGATCAACTGATGCAGG-AATTAGATGTTACAAATGTACGTGAACTTGAAGATTTTCTTATCAATGAGTGCATGTATGCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagagttggatgtttccaacgtaagagaactcgaagattatgcatgttcatgtagGGTATTGTCAGAGGCAAACTGGATCAACTGAGAAGATGCTTTGAA
aagattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagagaactcgaagattttctaatcaatgagtgcatgtatgcaagagttggatgtttccaacgtaagagaactcgaagattatgcatgttcatgtagGGTATTGTCAGAGGCAAACTGGATCAACTGAGAAGATGCTTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG