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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgctttcatatgttggcatcctcacttgttatttaaagcttgcaatttctatattataatttaacattttgatatattttcctttttttcttatgcagCTGTGTCCCACTCTACAATTTCAGCTCCATATATACTTACCTGATGGCTTCACCTAAAAGTTTTGTAGACAG

Basic information

species Zea mays
transcript GRMZM2G152057_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152057_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g50040.1 (Oryza sativa), 3'ss of exon 3
tttgctttcatatgt-tggcatcctcacttgttatttaaagcttgcaatttctatattataatttaacattttgatatattttcctttttttcttatgcagCTGTGTCCCACTCTACAATTTCAGCTCCATATATACTTACCTGATGGCTTCACCTAAAAGTTTTGTAGACAG
| || | |  | ||  |  ||   |   || |     || | ||   || | ||||      || ||||||   || |       |  ||||||  ||||||||||| || || ||||||||||||| ||||||||||||| ||||||||||  |||||||||||||||||||
tatgttgtagtttgaatttcaattttttttatgtaccaatgtttatcatct-tatagacgttttcaacattaacatttcaaaatatccttttctactgcagCTGTGTTCCTCTGTACAATTTCAGCTACATATATACTTACTTGATGGCTTCGACTAAAAGTTTTGTAGACAG

upper sequence: GRMZM2G152057_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ20454 (Selaginella moellendorffii), 3'ss of exon 3
tttgctttcatatgttggcatcctcacttgttatttaaagcttgcaatttctatattataatttaacattttgatatattttcctttttttcttatgcagCTGTGTCCCACTCTACAATTTCAGCTCCATATATACTTACCTGATGGCTTCACCTAAAAGTTTTGTAGACAG
                                           | |     || |||    ||    ||   || |   || | |   |||    | ||| || || ||  | |||| ||| |  | ||||||    ||  |||||||||||||||||||||||||||||||
-------------------------------------------gtatggcgtagattt---ttcggtatccagagaagcttacttggattt----tacagTTGCGTACCCTTGTACAGTTTTACGTTCATATACGAGTATTTGATGGCTTCACCTAAAAGTTTTGTAGACAG

upper sequence: GRMZM2G152057_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ28434 (Selaginella moellendorffii), 3'ss of exon 3
tttgctttcatatgttggcatcctcacttgttatttaaagcttgcaatttctatattataatttaacattttgatatattttcctttttttcttatgcagCTGTGTCCCACTCTACAATTTCAGCTCCATATATACTTACCTGATGGCTTCACCTAAAAGTTTTGTAGACAG
                                           | |     || |||    ||    ||   || | |  || |   ||   || | ||| || || ||  | |||| ||| |  | ||||||    ||  |||||||||||||||||||||||||||||||
-------------------------------------------gtatggcgtagattt---ttcggtatccagaga-agcttacaacttggattttacagTTGCGTACCCTTGTACAGTTTTACTTTCATATACGAGTATTTGATGGCTTCACCTAAAAGTTTTGTAGACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttctatattataatttaacattttgatatattttcctttttttcttatgcagCTGTGTCCCACTCTACAATTTCAGCTCCATATATACTTACCTGATGGCTTCACCTAAAAGTTTTGTAGACAG
                             tatattttcctttttt  CT-rich tract
      tatattataatttaac  TA-rich tract