Sequence
atgc intronic sequence ATGC exonic sequence...tttgctttcatatgttggcatcctcacttgttatttaaagcttgcaatttctatattataatttaacattttgatatattttcctttttttcttatgcagCTGTGTCCCACTCTACAATTTCAGCTCCATATATACTTACCTGATGGCTTCACCTAAAAGTTTTGTAGACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G152057_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g50040.1 (Oryza sativa), 3'ss of exon 3
tttgctttcatatgt-tggcatcctcacttgttatttaaagcttgcaatttctatattataatttaacattttgatatattttcctttttttcttatgcagCTGTGTCCCACTCTACAATTTCAGCTCCATATATACTTACCTGATGGCTTCACCTAAAAGTTTTGTAGACAG
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tatgttgtagtttgaatttcaattttttttatgtaccaatgtttatcatct-tatagacgttttcaacattaacatttcaaaatatccttttctactgcagCTGTGTTCCTCTGTACAATTTCAGCTACATATATACTTACTTGATGGCTTCGACTAAAAGTTTTGTAGACAG
upper sequence: GRMZM2G152057_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ20454 (Selaginella moellendorffii), 3'ss of exon 3
tttgctttcatatgttggcatcctcacttgttatttaaagcttgcaatttctatattataatttaacattttgatatattttcctttttttcttatgcagCTGTGTCCCACTCTACAATTTCAGCTCCATATATACTTACCTGATGGCTTCACCTAAAAGTTTTGTAGACAG
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-------------------------------------------gtatggcgtagattt---ttcggtatccagagaagcttacttggattt----tacagTTGCGTACCCTTGTACAGTTTTACGTTCATATACGAGTATTTGATGGCTTCACCTAAAAGTTTTGTAGACAG
upper sequence: GRMZM2G152057_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ28434 (Selaginella moellendorffii), 3'ss of exon 3
tttgctttcatatgttggcatcctcacttgttatttaaagcttgcaatttctatattataatttaacattttgatatattttcctttttttcttatgcagCTGTGTCCCACTCTACAATTTCAGCTCCATATATACTTACCTGATGGCTTCACCTAAAAGTTTTGTAGACAG
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-------------------------------------------gtatggcgtagattt---ttcggtatccagaga-agcttacaacttggattttacagTTGCGTACCCTTGTACAGTTTTACTTTCATATACGAGTATTTGATGGCTTCACCTAAAAGTTTTGTAGACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatttctatattataatttaacattttgatatattttcctttttttcttatgcagCTGTGTCCCACTCTACAATTTCAGCTCCATATATACTTACCTGATGGCTTCACCTAAAAGTTTTGTAGACAG
tatattttcctttttt CT-rich tract
tatattataatttaac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttgctttcatatgttggcatcctcacttgttatttaaagcttgcaatttctatattataatttaacattttgatatattttcctttttttcttatgcagCTGTGTCCCACTCTACAATTTCAGCTCCATATATACTTACCTGATGGCTTCACCTAAAAGTTTTGTAGACAG
- tgctttc
- - - - - - tgttggc
- - - - - - - - - - - - - - - - - - - -gcttgca