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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcggatgaatccatcattttccatctacgcatttcatgtcagcatggctgttgtttcatccctctgcatgtatcccgttgctgtaaattgccgtgtcgcgcagAGAAAACCCGCAAGGGAGACAAGGACGACGAAGATCTTGCGAGGGCCATACAGGACAGCCTCAACATGAACCCTTACACGCCTTACAACCCCTATGCTCC

Basic information

species Zea mays
transcript GRMZM2G151934_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211091867|gb|FL133027.1|FL133027
EST:     GGACCGTGCAATTGCAGAGTCTCTCACAGAGGACGTCAGAACCCCCAAAG                         AGAAAACCCGCAAGGGAGACAAGGACGACGAAGATCTTGCTAGGGCCATAC
genomic: GGACCGTGCAATTGCAGAGTCTCTCACAGAGGACGTCAGAACCCCCAAAGgtactcggat ... tgtcgcgcagAGAAAACCCGCAAGGGAGACAAGGACGACGAAGATCTTGCGAGGGCCATAC
EST: gi|13558939|gb|BG550294.1|BG550294
EST:     GGACCGTGCAATTGCAGAGTCTCTCACAGAGGACGTCAGAACCCCCAAAG                         AGAAAACCCGC-AGGGAGACAAGGACGACGAAGATCTTGCGAGGGCCATAC
genomic: GGACCGTGCAATTGCAGAGTCTCTCACAGAGGACGTCAGAACCCCCAAAGgtactcggat ... tgtcgcgcagAGAAAACCCGCAAGGGAGACAAGGACGACGAAGATCTTGCGAGGGCCATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgtttcatccctctgcatgtatcccgttgctgtaaattgccgtgtcgcgcagAGAAAACCCGCAAGGGAGACAAGGACGACGAAGATCTTGCGAGGGCCATACAGGACAGCCTCAACATGAACCCTTACACGCCTTACAACCCCTATGCTCC
                                 tgtaaatt  TA-rich tract