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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcactagataatatgtatccagtttgagtcattgatggtagacacatataatgtttattggtgaagctgtattttcttaatgctgtcatgtagATTGCACTGCAGCTAGCTGTATTAATCTCCAAGATTGCACGATTGGATTACCCAAAAGAGTG

Basic information

species Zea mays
transcript GRMZM2G151905_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151905_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g49260.1 (Oryza sativa), 3'ss of exon 3
gtgtgcactagataatatgtatccagtttgagtcattgatggtagacacatataatgtttattggt--gaagctgtatt----ttcttaatgctgtcatgtagATTGCACTGCAGCTAGCTGTATTAATCTCCAAGATTGCACGATTGGATTACCCAAAAGAGTG
|||  || |  |||| || ||| || |  ||     | |   |  ||| ||||||| |  |||| |  |||  ||  ||    || ||   ||||  ||| |||||||||| |||||||||||| |||| ||||||||||||||  | |||||||||||||| ||
gtgcacattttataacatatatgcaatccga-----taacattgaacaaatataatatgcattgatcggaaattgctttcttgttgttgccgctgcaatgcagATTGCACTTCAGCTAGCTGTACTAATTTCCAAGATTGCACGCCTAGATTACCCAAAAGAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78107784|gb|DV526202.1|DV526202
EST:     ACCACCTTCGGAAAAATCTTTTGCTAAACATGCGTGAGGAAAATAGCCAG                         ATTGCACTGCAGCTAGCTGTATTAATCTCCAAGATTGCACGATTGGATTAC
genomic: ACCACCTTCGGAAAAATCTTTTGCTAAACATGCGTGAGGAAAATAGCCAGgtgtgcacta ... tgtcatgtagATTGCACTGCAGCTAGCTGTATTAATCTCCAAGATTGCACGATTGGATTAC
EST: gi|93282501|gb|EB674765.1|EB674765
EST:     ACCACCTTCGGAAAAATCTTTTGCTAAACATGCGTGAGGAAAATAGCCAG                         ATTGCACTGCAGCTAGCTGTATTAATCTCCAAGATTGCACGATTGGATTAC
genomic: ACCACCTTCGGAAAAATCTTTTGCTAAACATGCGTGAGGAAAATAGCCAGgtgtgcacta ... tgtcatgtagATTGCACTGCAGCTAGCTGTATTAATCTCCAAGATTGCACGATTGGATTAC
EST: gi|91051071|gb|EB161489.1|EB161489
EST:     ACCACCTTCGGAAAAATCTTTTGCTAAACATGCGTGAGGAAAATAGCCAG                         ATTGCACTGCAGCTAGCTGTATTAATCTCCAAGATTGCACGATTGGATTAC
genomic: ACCACCTTCGGAAAAATCTTTTGCTAAACATGCGTGAGGAAAATAGCCAGgtgtgcacta ... tgtcatgtagATTGCACTGCAGCTAGCTGTATTAATCTCCAAGATTGCACGATTGGATTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagacacatataatgtttattggtgaagctgtattttcttaatgctgtcatgtagATTGCACTGCAGCTAGCTGTATTAATCTCCAAGATTGCACGATTGGATTACCCAAAAGAGTG
                                    tcttaat  putative branch site (score: 3)
     acatataatgtttatt  TA-rich tract