1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctatgccaaattctttgtttttatagtctaagctgttgccacaatttttttttgattctctatgctgcttacatatttgcccaccctctccccaacaagGTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG
species | Zea mays |
transcript | GRMZM2G151863_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCTGCGCTTTATGTGATGACA GTATTGTCAACTGGACTGGGCAGAATAGTGCCCAACTTGATATCAAGGAAGEST: gi|88747529|gb|DY531670.1|DY531670
genomic: ATCTGCGCTTTATGTGATGACAgtgagctatt ... ccccaacaagGTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAG
EST: CTATCTGCGCTTTATGTGATGACA GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGEST: gi|149055348|gb|EE156262.2|EE156262
genomic: CTATCTGCGCTTTATGTGATGACAgtgagctatt ... ccccaacaagGTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAG
EST: CCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACA GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGEST: gi|60358343|gb|DN225316.1|DN225316
genomic: CCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACAgtgagctatt ... ccccaacaagGTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAG
EST: CCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACA GTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAG
genomic: CCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACAgtgagctatt ... ccccaacaagGTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAG
tttttttttgattctctatgctgcttacatatttgcccaccctctccccaacaagGTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG
tgcttac putative branch site (score: 2)
tttgcccaccctctcc putative PPT
ttacatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctatgccaaattctttgtttttatagtctaagctgttgccacaatttttttttgattctctatgctgcttacatatttgcccaccctctccccaacaagGTATTGTCAACTGGACTTGGCAGAATAGTGCCCAACTTGATATCAAGGAAGCACACTAATAGTGCTGCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT