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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgattagtgatgtgagctaggaggatttgagtttcggaaatggcctctgtgtacctgctgtcctactgcattgccttggctgtgagatttggatgtgtggctgtttcttcgagctgttcaattttttttctttgctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACA

Basic information

species Zea mays
transcript GRMZM2G151863_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151863_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os11g28300.2 (Oryza sativa), 3'ss of exon 3
gtactgattagtgatgtgagctaggaggatttgagtttcggaaatggcctctgtgtacctgctgtcctactgc--attgccttggctgtgagatttggatgtgtggctgtttcttcgagctgttcaattttttttctttgctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACA
|||||   |  ||   ||||||||||||  |||   || ||        | |   | | || ||       |    ||    ||||| |||  ||| ||||    |  |  | ||   | ||||    ||   ||| | | ||||||||||||||||||| || || || ||||| ||||| ||||| |||||||||||||||||||| ||  |||||||||| ||||| ||||| || |||||||| 
gtacttgct--tggaatgagctaggaggggttggagtttgggttccatatgtagttgcttggtgcttgggggttagttagggtggctatgaagttttgatgatgagaggggtatt---gatgtttgggttgcattcatgg-tgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACG

upper sequence: GRMZM2G151863_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA09G38640.1 (Glycine max), 3'ss of exon 3
gtactgattagtgatgtgagctaggaggatttgagtttcggaaatggcctctgtgtacctgctgtcctactgcattgccttggctgtgagatttggatgtgtggctgtttcttcgagctgttcaattttttttctttgctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACA
              ||  |  |||||| | |  |||     | |  || | |   ||  || |  |   ||    ||  | |||| ||                      |||  | |||    ||||||||| | ||||     ||||||| |||||||| || || || || || || ||||| ||||| ||||| ||||||||||| ||||||||||| ||   ||| ||   | | ||||||
--------------tggcaaataggagcagtcaagtcattaagaatgctttt---tatatgatacctctcttttatgtttgggctatgg---------------------cttttaactg----attttttttttatgct-----agATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACA

upper sequence: GRMZM2G151863_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA18G47670.1 (Glycine max), 3'ss of exon 3
gtactgattagtgatgtgagctaggaggatttgagtttcggaaatggcctctgtgtacctgctgtcctactgcattgccttggctgtgagatttggatgtgtggctgtttcttcgagctgttcaattttttttctttgctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACA
                  |  |||||| | |  |||     |          || | | || |||  || |    | |||   || | |  ||||| | |  |||| ||      | |||   |||||||||| |         |||||||| |||||||| || || || || || || ||||| ||||| ||||| ||||||||||| ||||||||||| ||   ||| ||   | | ||||||
------------------aaataggagcagtcaagtcattaa----------gtatgcttgttgtttta-tatgatacctct-ctttcatgtttgggt-tacggctttt------aactg---aattttttttatgc-------tagATTGGGGATGAGACGTTTATAATAGCAGCTCTTATGGCTATGCGTCACCCTAAGTCAATTGTCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211089877|gb|FL156487.1|FL156487
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGAATGGCGATGCGGCACCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGA-TGGCGATGCGGCACCC
EST: gi|32915629|gb|CF020441.1|CF020441
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211092351|gb|FL156509.1|FL156509
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCT
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCT
EST: gi|211542033|gb|FL156456.1|FL156456
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211094820|gb|FL156518.1|FL156518
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211087425|gb|FL156470.1|FL156470
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|101393554|gb|EB818709.1|EB818709
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|26558705|gb|CA830940.1|CA830940
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211094829|gb|FL156527.1|FL156527
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|71433454|gb|DR814504.1|DR814504
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|148955189|gb|EC900711.2|EC900711
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|50336724|gb|CO531850.1|CO531850
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211094824|gb|FL156522.1|FL156522
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211092352|gb|FL156510.1|FL156510
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCG
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCG
EST: gi|211094830|gb|FL156528.1|FL156528
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGYGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|93014798|gb|EB640318.1|EB640318
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211097304|gb|FL156543.1|FL156543
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCMGTGWG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGC
EST: gi|211099771|gb|FL156546.1|FL156546
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211097301|gb|FL156540.1|FL156540
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|74242669|gb|DT650583.1|DT650583
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211542032|gb|FL156455.1|FL156455
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211097303|gb|FL156542.1|FL156542
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCG
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCG
EST: gi|211094822|gb|FL156520.1|FL156520
EST:     GGCTGTTCGACGCACTCTTTGSCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGA
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGA
EST: gi|211094827|gb|FL156525.1|FL156525
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|71431955|gb|DR813005.1|DR813005
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211097296|gb|FL156535.1|FL156535
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATTGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGAT-GAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACC
EST: gi|211539027|gb|FL156454.1|FL156454
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGC
EST: gi|74242877|gb|DT650791.1|DT650791
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211089887|gb|FL156497.1|FL156497
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211097293|gb|FL156532.1|FL156532
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCAYGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGAT
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGAT
EST: gi|71757648|gb|DR955585.1|DR955585
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211092353|gb|FL156511.1|FL156511
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211089882|gb|FL156492.1|FL156492
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|22473434|gb|BU037914.1|BU037914
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211089888|gb|FL156498.1|FL156498
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|71417678|gb|DR804170.1|DR804170
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|78073959|gb|DV502393.1|DV502393
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211097294|gb|FL156533.1|FL156533
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCAT
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCAT
EST: gi|211094823|gb|FL156521.1|FL156521
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: G-CTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211089875|gb|FL156485.1|FL156485
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGA
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGA
EST: gi|71775511|gb|DR973389.1|DR973389
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|76291625|gb|DV031193.1|DV031193
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211087426|gb|FL156471.1|FL156471
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTKAG                         ATTTGAGATGAGACATTCATCA
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCA
EST: gi|211094831|gb|FL156529.1|FL156529
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATT
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATT
EST: gi|211089885|gb|FL156495.1|FL156495
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|89248372|gb|DY620158.1|DY620158
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211092344|gb|FL156502.1|FL156502
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211097295|gb|FL156534.1|FL156534
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211099772|gb|FL156547.1|FL156547
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211542044|gb|FL156467.1|FL156467
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|76284809|gb|DV024377.1|DV024377
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|78119849|gb|DV538233.1|DV538233
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|67010532|gb|CO439281.1|CO439281
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211097292|gb|FL156531.1|FL156531
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|91048229|gb|EB158647.1|EB158647
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211089880|gb|FL156490.1|FL156490
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211092356|gb|FL156514.1|FL156514
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211092354|gb|FL156512.1|FL156512
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|71770354|gb|DR968291.1|DR968291
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211089886|gb|FL156496.1|FL156496
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211089878|gb|FL156488.1|FL156488
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211094818|gb|FL156516.1|FL156516
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|149008091|gb|EE040331.2|EE040331
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATTC-TTGCTGCGCTG
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCAT-CATTGCTGCGCTG
EST: gi|211087436|gb|FL156481.1|FL156481
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGNATGGCGATGCGGCACCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTG-ATGGCGATGCGGCACCC
EST: gi|211099770|gb|FL156545.1|FL156545
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211097298|gb|FL156537.1|FL156537
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211089883|gb|FL156493.1|FL156493
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATC
EST: gi|148942936|gb|EC887981.2|EC887981
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|74239215|gb|DT647129.1|DT647129
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211087438|gb|FL156483.1|FL156483
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|211092348|gb|FL156506.1|FL156506
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|91875143|gb|EB405100.1|EB405100
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
EST: gi|86466281|gb|DY232652.1|DY232652
EST:     GGCTGTTCGACGCACTCTTTGCCACCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCAGATGCGGCACCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGC-GATGCGGCACCC
EST: gi|211094825|gb|FL156523.1|FL156523
EST:     GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAG                         ATTGGAGATGAGACCTTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC
genomic: GGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 68

TGCACTGGCGGAGGGCGATCATGGGGTGGCACTAGACGAGGTTGGACCGGGGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 85

TGCACTGGCGGAGGGCGATCATGGGGTGGCACTAGACGAGGTTGGACCGGGGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 93

TGCACTGGCGGAGGGCGATCATGGGGTGGCACTAGACGAGGTTGGACCGGGGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACA


Block sizes: 41 (upstream exon), 49 (downstream exon)
Score: 77

TGCACTGGCGGAGGGCGATCATGGGGTGGCACTAGACGAGGTTGGACCGGGGCTGTTCGACGCACTCTTTGCCAGCCTCTCCATGATACTAGTCAGTGAGgtactgatta ... gctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggatgtgtggctgtttcttcgagctgttcaattttttttctttgctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACA
                                            tgctgat  putative branch site (score: 77)
                                 ttttttttctttgct  CT-rich tract
                            ttcaattttttttctt  TA-rich tract