1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aactgtgtaatccagtttgagtcactactattttttgtctttaagattatgtatgctcagaatatactagtaaatttacattcacttgtttcccttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGCTACTGCAGTTGTTGTCAACAAAAGGAGAAGGAATATGCTTAAAGAGTTG
species | Zea mays |
transcript | GRMZM2G151549_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACCATGAAAATGGTAGAAATGAGATCATTGATCTGTTCTTCCAGGACAG GTACTTGAATGCTATACAGEST: gi|67023707|gb|CO452456.1|CO452456
genomic: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAG
EST: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAG GTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGCEST: gi|149086591|gb|EE176135.2|EE176135
genomic: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
EST: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAG GTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGCEST: gi|71772604|gb|DR970532.1|DR970532
genomic: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
EST: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAG GTACTTGAATGCTATACAGACAAATGEST: gi|148932020|gb|EC875324.2|EC875324
genomic: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAGACAAATG
EST: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAG GTACTTGAATGCTATACAGACAAATGCACACCATCTTATTANGTATCTAGCEST: gi|6020868|gb|AW065796.1|AW065796
genomic: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
EST: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAG GTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGCEST: gi|6056588|gb|AW090993.1|AW090993
genomic: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
EST: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAG GTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGCEST: gi|6194537|gb|AW146641.1|AW146641
genomic: AACCATGAAAATGGTAGAAATGGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
EST: GGGATCATTGATCTGTTCTTCCAGGACAG GTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
genomic: GGGATCATTGATCTGTTCTTCCAGGACAGgttcgtctgt ... tcccttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
attatgtatgctcagaatatactagtaaatttacattcacttgtttcccttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGCTACTGCAGTTGTTGTCAACAAAAGGAGAAGGAATATGCTTAAAGAGTTG
ttcacttgtttccctt CT-rich tract
aatatactagtaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactgtgtaatccagtttgagtcactactattttttgtctttaagattatgtatgctcagaatatactagtaaatttacattcacttgtttcccttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGCTACTGCAGTTGTTGTCAACAAAAGGAGAAGGAATATGCTTAAAGAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - -tgtatgc