1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaactggtgaccattcctaatatttcttttttgcatttcgggaagcaaacatccattaatgttcccctgttttgtttgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCACTGCTTTTAGATGTTC
species | Zea mays |
transcript | GRMZM2G151268_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGCGCAATTWAGTCACACAATGAWAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGEST: gi|9028689|gb|BE238729.1|BE238729
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGG
EST: GGGCGCAATTAAGTCACACAATGAAAGTT-ACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGEST: gi|211029306|gb|FL370361.1|FL370361
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAG
EST: GGGCGCAATTAAGTCACACAATGAA-GTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGATAGACTTCTCTEST: gi|29945213|gb|CB815527.1|CB815527
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCT
EST: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAEST: gi|211511056|gb|FL378831.1|FL378831
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
EST: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAMC-TG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACEST: gi|211355840|gb|FL403701.1|FL403701
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAAC
EST: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTEST: gi|211317656|gb|FL416767.1|FL416767
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGT
EST: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAMC-TG CCCAAGGACTTCTGGAAGAATGAACTGAAAGAEST: gi|211156585|gb|FL395419.1|FL395419
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGA
EST: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTG CCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
genomic: GGGCGCAATTAAGTCACACAATGAAAGTTTACTTGCCAGAGTGTAACCTGgtaactggtg ... tgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGA
tgcatttcgggaagcaaacatccattaatgttcccctgttttgtttgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCACTGCTTTTAGATGTTC
cattaat putative branch site (score: 3)
ttcccctgttttgttt CT-rich tract
ttttgtttgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactggtgaccattcctaatatttcttttttgcatttcgggaagcaaacatccattaatgttcccctgttttgtttgtatatcagCCCAAGGACTTCTGGAAGAATGAACTGAAAGACTTCTCTAACAAAAGTGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCACTGCTTTTAGATGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG