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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcacatgtctagcctaccccaacttgcttgggactaaaagtctttgttgttattgttgttgtatatcaattattgagttttatctatcgtgcattgcagGTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAGAGTTCAACAGGGAACCCCTATATGCAAAATTTCGCCTCCGTGAACCTTTTCACAAGCCAA

Basic information

species Zea mays
transcript GRMZM2G151254_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151254_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g50380.1 (Oryza sativa), 3'ss of exon 4
--gtcacatgtctagcctaccccaacttgcttgggactaaaagtctttgttgttattgttgttgtatatcaattattgagttttatctatcgtgcatt--gcagGTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAGAGTTCAACAGGGAACCCCTATATGCAAAATTTCGCCTCCGTGAACCTTTTCACAAGCCAA
   | |||  ||| ||  |  |   ||   ||     ||    ||||    | | |   ||  |  | |    | ||   ||| || | |  |  |||  |||||| || ||||||||||||||||| ||||||||||    |||||||||| |||||||  | ||||||||||| |||||||| ||||||||||||||||| |
agtttacaaatctggca-atacttgctgctttat--ttatgtttcttccaaggtctaagtgaagattgttgggttttcc-tttaatttgttatatattttgcagGTCTGCAGATCAATTGGTGATGCCTATCTCAAAAGATCAGAGTTCAACCGGGAACCTTTGTATGCAAAATTCCGCCTCCGGGAACCTTTTCACAAGCCCA

upper sequence: GRMZM2G151254_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv00s0434g00020.t01 (Vitis vinifera), 3'ss of exon 6
gtcacatgtctagcctaccccaacttgcttgggactaaaagtctttgttgttattgttgttgtatatcaattattgagttttatct--atcgtg-cattgcagGTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAGAGTTCAACAGGGAACCCCTATATGCAAAATTTCGCCTCCGTGAACCTTTTCACAAGCCAA
  |       | |            |  |    |   ||   |||  || || |||   | ||  | || || ||   |  | |||   |  ||  ||||||| ||| |||||| |||||||||| |||||||||||||   || || |||||||| ||  | ||||  || ||||| || || || |||||  | | |||||
--cttgaagttgggtggtaatgtagttttccatatggaattacttgatttttcttgacatagtgga-cagttttttcttactgtctcagttttgatattgcagATTTCTAGATCTATTGGTGATGTATATCTCAAAAAGGCTGAATTTAACAGGGAGCCTTTGTATGTCAAGTTTCGACTTCGGGAGCCTTTGAAAAGGCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32848117|gb|CD987798.1|CD987798
EST:     ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTTAAAGGACTAATTCAG                         GTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAGAGTTCAACAGG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTTAAAGGACTAATTCAGgtgtgtattc ... tgcattgcagGTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAGAGTTCAACAGG
EST: gi|13382135|gb|BG458810.1|BG458810
EST:     ACATTGGTGTTCTCAAGCACAATGTTTGGCGTGTTAAAGGACTAATTCAG                         GTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTTAAAGGACTAATTCAGgtgtgtattc ... tgcattgcagGTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAG
EST: gi|71300865|gb|DR786463.1|DR786463
EST:     ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTTAAAGGACTAATTCAG                         GTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAGAGTTCAACAGG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTTAAAGGACTAATTCAGgtgtgtattc ... tgcattgcagGTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAGAGTTCAACAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgttattgttgttgtatatcaattattgagttttatctatcgtgcattgcagGTTTGTAGATCAATTGGTGATGCATATCTCAAAAAGCAAGAGTTCAACAGGGAACCCCTATATGCAAAATTTCGCCTCCGTGAACCTTTTCACAAGCCAA
                 tatatcaattattgag  TA-rich tract