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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctatctactgacatgcagtcctcttgtgaagtttatattacttactgtgccacgtgtgtaatacatgctttacgtcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTATTACTGTCCTGAACTCTGGGTGGTCGTCTAGTTGCAATGTCATAATTAT

Basic information

species Zea mays
transcript GRMZM2G151252_T03
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14621547|gb|BI142308.1|BI142308
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|32911428|gb|CF016240.1|CF016240
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|37384104|gb|CF629099.1|CF629099
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|4837551|gb|AI670641.1|AI670641
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|32864175|gb|CF003857.1|CF003857
EST:     AAATGAAAGAGCGGAAGAACAGGTCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|29543821|gb|CB604201.1|CB604201
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|6695450|gb|AW288558.1|AW288558
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|29543742|gb|CB604122.1|CB604122
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|18650073|gb|BM498892.1|BM498892
EST:     CGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: CGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|19351052|gb|BM895584.1|BM895584
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|21331260|gb|BQ486641.1|BQ486641
EST:     AAATGAAAGAGCGGAAGAACAGGACCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|8930253|gb|BE225017.1|BE225017
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|31558071|gb|CD527283.1|CD527283
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACA
EST: gi|33101619|gb|CF061579.1|CF061579
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|32804188|gb|CD956424.1|CD956424
EST:     GATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: GATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|29544175|gb|CB604555.1|CB604555
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|32849324|gb|CD989005.1|CD989005
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|14206819|gb|BG840497.1|BG840497
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAA-GCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|17921705|gb|BM259356.1|BM259356
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACA
EST: gi|60397878|gb|DN230694.1|DN230694
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|33092128|gb|CF052122.1|CF052122
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|87152088|gb|DY396877.1|DY396877
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|28987571|gb|CB351700.1|CB351700
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|113789340|gb|DW909149.1|DW909149
EST:     GAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: GAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|32923426|gb|CF028238.1|CF028238
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|211338906|gb|FL394233.1|FL394233
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|32923248|gb|CF028060.1|CF028060
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|113615885|gb|DW781332.1|DW781332
EST:     GTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATACTTTCTGT
genomic: GTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATA-TTTCTGT
EST: gi|32943820|gb|CF048639.1|CF048639
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGCGGTGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|32911429|gb|CF016241.1|CF016241
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|32929003|gb|CF033815.1|CF033815
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|29543417|gb|CB603813.1|CB603813
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|14244546|gb|BG840675.2|BG840675
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|211400402|gb|FL382669.1|FL382669
EST:     GTGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAAG
genomic: ATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAA-G
EST: gi|33095068|gb|CF055062.1|CF055062
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|211422660|gb|FL460763.1|FL460763
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|19436140|gb|BM952550.1|BM952550
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|60353225|gb|DN220198.1|DN220198
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|33091287|gb|CF051281.1|CF051281
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGCGTCAAGAAG                         ACCAAGGCTGGTGATGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|37391783|gb|CF633135.1|CF633135
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|71774798|gb|DR972676.1|DR972676
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|14701101|gb|BI233519.1|BI233519
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTATA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|15499601|gb|BI596114.1|BI596114
EST:     AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
EST: gi|166676541|gb|EG291966.1|EG291966
EST:     AGAAGATCCGTGGTGTCAAGAAG                         ACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA
genomic: AGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 1429

AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTATTACTGTCCTGAACTCTGGGTGGTCGTCTAGTTGCAATGTCATAATTAT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 779

AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTATTACTGTCCTGAACTCTGGGTGGTCGTCTAGTTGCAATGTCATAATTAT


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 457

AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTATTACTGTCCTGAACTCTGGGTGGTCGTCTAGTTGCAATGTCATAATTAT


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 594

AATGGTCTTGCTACTAAGGTTGAGAAGTCCCGCAAGCAAATGAAAGAGCGGAAGAACAGGGCCAAGAAGATCCGTGGTGTCAAGAAGgtgagctatc ... tcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTATTACTGTCCTGAACTCTGGGTGGTCGTCTAGTTGCAATGTCATAATTAT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttatattacttactgtgccacgtgtgtaatacatgctttacgtcttttacagACCAAGGCTGGTGACGCCAAGAAGAAGTAAACAGTCATTTATATTTCTGTATTACTGTCCTGAACTCTGGGTGGTCGTCTAGTTGCAATGTCATAATTAT
         tacttac  putative branch site (score: 594)
                                           cgtctttt  putative PPT
     atattactta  TA-rich tract