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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttatgcaaccgattcctgtatgtttgtagcatctatgttttccaaacttccaattgcactctgaacaatacttttaagaagttgctctgtgtgtttaatagacagtcagtttgacactgatcttgccacatgaatttgtaccactgtcaaaagccacacgtgtgatcaatagtgttgctacttttttcacagACAGCAAAAATCAATCAAGGGAACACTGCTTTGAAGCGAGTGGTTGAGTCTATTGCTAATGGTGATTCCCATGTTCCATTCAGGGACAGCAAACTCACAA

Basic information

species Zea mays
transcript GRMZM2G150984_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150984_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g56540.1 (Oryza sativa), 3'ss of exon 3
gtgtgttatgcaaccgattcctgtatgtttgtagcatctatgttttccaaacttccaattgcactctgaacaatacttttaagaagttgctctgtgtgtttaatagacagtcagtttgacactgatcttgccacatgaatttgtaccactgtcaaaagccacacgtgtgatcaatagtgttgctacttttttcacagACAGCAAAAATCAATCAAGGGAACACTGCTTTGAAGCGAGTGGTTGAGTCTATTGCTAATGGTGATTCCCATGTTCCATTCAGGGACAGCAAACTCACAA
                                                                                       |||   |  |   || |||  | |   |||    |  ||  ||  |  ||         |  |  || |||   ||  | |  |  | | | ||  |||| ||   |||||| ||||| || || ||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||  | |||||||| |||||||
---------------------------------------------------------------------------------------tgcaaagattagctactag-tactttttttcctgcaaattatgttatgtgt-------tcgataacagaagtt-catattttgtttacattattattactgttga-acagACTGCAAAGATTAACCAAGGGAACACGGCTTTGAAACGAGTGGTTGAGTCCATTGCTAATGGTGACTCCCATGTTCCATTTCGAGACAGCAAGCTCACAA

upper sequence: GRMZM2G150984_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA10G32610.1 (Glycine max), 3'ss of exon 4
gtgtgttatgcaaccgattcctgtatgtttgtagcatctatgttttccaaacttccaattgcactctgaacaatacttttaagaagttgctctgtgtgtttaatagacagtcagtttgacactgatcttgccacatgaatttgtaccactgtcaaaagccacacgtgtgatcaatagtgttgctacttttttcacagACAGCAAAAATCAATCAAGGGAACACTGCTTTGAAGCGAGTGGTTGAGTCTATTGCTAATGGTGATTCCCATGTTCCATTCAGGGACAGCAAACTCACAA
                                                                                                             || | |||   ||   | |           |||| | ||   |  |   |    |   | || | || ||||   |   || | | |||| ||||||||||||||||| || |  ||| ||||| ||||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||||||||| || |
-------------------------------------------------------------------------------------------------------------gtaatttttttaccattttgatttttcttttttgaatca---tgcagttctctgctgattatta-tactgttaacaaaattat-atagACTGCAAAAATCAATCAAGGAAATATAGCTCTGAAGAGAGTGGTGGAGTCCATTGCAAATGGCGATTCACATGTGCCTTTCAGGGACAGCAAACTTACCA

upper sequence: GRMZM2G150984_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA20G34970.1 (Glycine max), 3'ss of exon 3
gtgtgttatgcaaccgattcctgtatgtttgtagcatctatgttttccaaacttccaattgcactctgaacaatacttttaagaagttgctctgtgtgtttaatagacagtcagtttgacactgatcttgccacatgaatttgtaccactgtcaaaagccacacgtgtgatcaatagtgttgctacttttttcacagACAGCAAAAATCAATCAAGGGAACACTGCTTTGAAGCGAGTGGTTGAGTCTATTGCTAATGGTGATTCCCATGTTCCATTCAGGGACAGCAAACTCACAA
                                                                                                                |  ||    |  || |     |||   ||| ||    |||      |  |   | |  |  |   |  ||  | |    | | |||| ||||||||||||||||| || |  ||  ||||| ||||||| ||||| ||||| ||||| ||||| ||||| || || |||||||||||||| || |
--------------------------------------------------------------------------------------------------------------gtaactttttgccaatttgatttcat---tttttaatcatgtagttctctgctgat-tagtatactatactgtcaatgaaattatagACTGCAAAAATCAATCAAGGAAATATAGCGCTGAAGAGAGTGGTGGAGTCCATTGCAAATGGCGATTCACATGTGCCTTTTAGGGACAGCAAACTTACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaccactgtcaaaagccacacgtgtgatcaatagtgttgctacttttttcacagACAGCAAAAATCAATCAAGGGAACACTGCTTTGAAGCGAGTGGTTGAGTCTATTGCTAATGGTGATTCCCATGTTCCATTCAGGGACAGCAAACTCACAA
                                     ttgctacttttttc  CT-rich tract
                                         tactttttt  TA-rich tract