1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cacactatataccacgtactctagctaccgatcgatcggccctgaccctgacaagattttgcttgctgctttgcatggcggatcggacggacgggcgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGCCTGAACGTGTGGTCCGCCAAGGTGGCGTCGGCGGCGGAGTTCAGCCTCT
species | Zea mays |
transcript | GRMZM2G150962_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCGGGCCAGCCACCACGCCCGCCGCGACTCGACCAGCAGCGGCCACGAG CACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGCEST: gi|50330983|gb|CO526109.1|CO526109
genomic: CCCGGGCCAGCCACCACGCCCGCCGCGACTCGACCAGCAGCGGCCACGAGgtcagtctct ... acgggcgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGC
EST: CCCGGGCCAGCCACCACGCCCGCCGCGACTCGACCAGCAGCGGCCACGAG CACGCGGTGGGGTACGTGACGGGGGACCAGTTCT
genomic: CCCGGGCCAGCCACCACGCCCGCCGCGACTCGACCAGCAGCGGCCACGAGgtcagtctct ... acgggcgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCT
ccctgacaagattttgcttgctgctttgcatggcggatcggacggacgggcgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGCCTGAACGTGTGGTCCGCCAAGGTGGCGTCGGCGGCGGAGTTCAGCCTCT
aagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacactatataccacgtactctagctaccgatcgatcggccctgaccctgacaagattttgcttgctgctttgcatggcggatcggacggacgggcgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGCCTGAACGTGTGGTCCGCCAAGGTGGCGTCGGCGGCGGAGTTCAGCCTCT
- - - - - - - - - - - -gctaccg
- - - - - - - - - - - - - - - - - - -ggccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgg