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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacactatataccacgtactctagctaccgatcgatcggccctgaccctgacaagattttgcttgctgctttgcatggcggatcggacggacgggcgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGCCTGAACGTGTGGTCCGCCAAGGTGGCGTCGGCGGCGGAGTTCAGCCTCT

Basic information

species Zea mays
transcript GRMZM2G150962_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150962_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g07570.1 (Oryza sativa), 3'ss of exon 3
cacactatataccacgtactctagctaccgatcgatcggccctgaccctgacaagattttgcttgctg----ctttgcatggcggatcggacggacgggcgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGCCTGAACGTGTGGTCCGCCAAGGTGGCGTCGGCGGCGGAGTTCAGCCTCT
  || |    || | |  |  | || |     | |    |  | |    ||    | ||   | ||||      |||    || |||   |  || |   |||||| ||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||| || | ||||||| |||||||||||||||||||||
--caatggcgacaatg-gcgatggcgagttggcaacgaactttaattaagagtgtaattaattagctgagattgttgatgagctgatgaaaatgatga-tgcagCATGCGGTGGGGTACGTGACGGGGGATCAGTTCTACGGGGCGAAGGCGAGCCTGAACGTGTGGTCGGCGAGGGTGGCGACGGCGGCGGAGTTCAGCCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50330983|gb|CO526109.1|CO526109
EST:     CCCGGGCCAGCCACCACGCCCGCCGCGACTCGACCAGCAGCGGCCACGAG                         CACGCGGTGGGGTACGTGACGGGGGACCAGTTCT
genomic: CCCGGGCCAGCCACCACGCCCGCCGCGACTCGACCAGCAGCGGCCACGAGgtcagtctct ... acgggcgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCT
EST: gi|91868007|gb|EB399887.1|EB399887
EST:     CCCGGGCCAGCCACCACGCCCGCCGCGACTCGACCAGCAGCGGCCACGAG                         CACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGC
genomic: CCCGGGCCAGCCACCACGCCCGCCGCGACTCGACCAGCAGCGGCCACGAGgtcagtctct ... acgggcgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctgacaagattttgcttgctgctttgcatggcggatcggacggacgggcgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGCCTGAACGTGTGGTCCGCCAAGGTGGCGTCGGCGGCGGAGTTCAGCCTCT
       aagatttt  TA-rich tract