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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttactctcttagcttggcaggttaccttttgtgtttgcttgggaggcttaaagtgatcctccatttggttttgtttttacaggttgtatttccacgtgttaacctcttgttttgttctagTTGTAGGGACTGTTGATGGAGGGAGACCGCCAACAAAAATAAAGACTGATCTTAAAAAACCCATTGTTAACCTGGCTTGCCATCCCCGCCTCCCTGTCTT

Basic information

species Zea mays
transcript GRMZM2G150772_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150772_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os09g24260.1 (Oryza sativa), 3'ss of exon 3
----------gttactctcttagcttggcaggttaccttttgtgtttgcttgggaggcttaaagtgatcctccatttggttttgtttttacaggttgtatttccacgtgttaacc--------tcttgttttgttctagTTGTAGGGACTGTTGATGGAGGGAGACCGCCAACAAAAATAAAGACTGATCTTAAAAAACCCATTGTTAACCTGGCTTGCCATCCCCGCCTCCCTGTCTT
          ||||||   |     |  |    |  || |  | |||||||  |||||||||| || ||||| |||||  | |  ||||| | |||  | ||     || ||||         | ||  | | ||| |||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||| |||||| |
gttattcctcgttacttagtctctctctctctctctctctcttttttgcttctgaggcttaaa-tggtcctctatttgactatacttttaaaagtttcacttatttatgctaacaactatgtattttcctctcttccagTTGTTGGGACTGTTGAAGGAGGGAGGCCGCCAACAAAAATAAAGACTGATCTTAAAAAGCCTGTTGTTAACCTGGCTTGCCATCCTCGCCTTCCTGTCCT

upper sequence: GRMZM2G150772_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv00s0379g00020.t01 (Vitis vinifera), 3'ss of exon 2
-----------------------gttactctct---tagcttggcaggt-taccttttgtgttt----gcttgggaggcttaaagtgatcctccatttggttttgtttttacaggttgtatttccacgtgttaacctcttgttttgt-tctagTTGTAGGGACTGTTGATGGAGGGAGACCGCCAACAAAAATAAAGACTGATCTTAAAAAACCCATTGTTAACCTGGCTTGCCATCCCCGCCTCCCTGTCTT
                        | | || ||   ||| || |||| | |   | ||   |||    | ||  |  |  | ||||     |    ||  | || || |  |  || ||  ||| |  | || |  | ||    ||  |  |||||| || |||||||| || |||||| | ||||||||||||||||| ||||| || |||||  |||| || || |||||||| |||||||| |||||| |
gtttgatgttacttcctatagttatcattcactgaatagttttgcagttatggttgttaaattttgaagtttctgttgtatcaagtacctgtgttctttatgtttttgtgcctagtagtgcttctaattcttgaattgtttcactgcatgaagTTGTTGGAACTGTTGAAGGGGGGAGAGCACCAACAAAAATAAAGACAGATCTGAAGAAACCTGTTGTCAATCTTGCTTGCCACCCCCGCCTTCCTGTCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttttgtttttacaggttgtatttccacgtgttaacctcttgttttgttctagTTGTAGGGACTGTTGATGGAGGGAGACCGCCAACAAAAATAAAGACTGATCTTAAAAAACCCATTGTTAACCTGGCTTGCCATCCCCGCCTCCCTGTCTT
                               tgttaac  putative branch site (score: 2)
                                     cctcttgttttgttct  CT-rich tract
     ttgttttta  TA-rich tract