1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatttgttaattttttaatcgatctgcctgcccattcacattgttttaatagttgcaatttgcaaggtgcagataattgatgtgtttttggatgatttagGTAATTCTTGCTGGATTCCGTAGCGGGAAGTTCCAAGTTTTGGTTGCGACAAATGTGGCGGCGCGTGGTCTGGATATTAATGATGTGCAGCTTATCATTC
species | Zea mays |
transcript | GRMZM2G149520_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCATGGATCCCGTGCCTTGCATGGAGATGTAGCGCAAGCGCAGCGTGAA GTCTTTCTTGCTGGATTCCGTAGCGGGAAGTTCCAAGTTTTGGTTGCGACAEST: gi|32802066|gb|CD954302.1|CD954302
genomic: TTCATGGATCCCGTGCCTTGCATGGAGATGTAGCGCAAGCGCAGCGTGAAgtatgtgaat ... gatgatttagGTAATTCTTGCTGGATTCCGTAGCGGGAAGTTCCAAGTTTTGGTTGCGACA
EST: GATCCTGTGCCTTGCATGGAGATGTAGCGCAAGCGCAGCGTGAA GTAATTCTTGCTGGATTCCGTAGCGGGAAGTTCCAAGTTTTGGTTGCGACA
genomic: GATCCCGTGCCTTGCATGGAGATGTAGCGCAAGCGCAGCGTGAAgtatgtgaat ... gatgatttagGTAATTCTTGCTGGATTCCGTAGCGGGAAGTTCCAAGTTTTGGTTGCGACA
ttaatagttgcaatttgcaaggtgcagataattgatgtgtttttggatgatttagGTAATTCTTGCTGGATTCCGTAGCGGGAAGTTCCAAGTTTTGGTTGCGACAAATGTGGCGGCGCGTGGTCTGGATATTAATGATGTGCAGCTTATCATTC
ataattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttgttaattttttaatcgatctgcctgcccattcacattgttttaatagttgcaatttgcaaggtgcagataattgatgtgtttttggatgatttagGTAATTCTTGCTGGATTCCGTAGCGGGAAGTTCCAAGTTTTGGTTGCGACAAATGTGGCGGCGCGTGGTCTGGATATTAATGATGTGCAGCTTATCATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - tgcctgc
- - - - - - - - - - - - - - - - cattcac
- - - - - - - - - - - - - - - - - - - - - - - - - agttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -atttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt