1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gaaaaaaatttgttgcagccgggctgcaaacggcctggtttgcagcccggctgcaacaaatttttttccgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGCTCGGTCATCCAGCTCATCGCATGCGCAAGGTAAGGTTGCTTGCTTGCT
species | Zea mays |
transcript | GRMZM2G149481_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGEST: gi|76289720|gb|DV029288.1|DV029288
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
EST: TGGTTCGAGATGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGEST: gi|91878598|gb|EB408555.1|EB408555
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGEST: gi|71443461|gb|DR824511.1|DR824511
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGEST: gi|94475285|gb|EB704243.1|EB704243
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
EST: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
genomic: TGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
ctgcaaacggcctggtttgcagcccggctgcaacaaatttttttccgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGCTCGGTCATCCAGCTCATCGCATGCGCAAGGTAAGGTTGCTTGCTTGCT
tttttttccgctc CT-rich tract
aacaaattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaaaaatttgttgcagccgggctgcaaacggcctggtttgcagcccggctgcaacaaatttttttccgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGCTCGGTCATCCAGCTCATCGCATGCGCAAGGTAAGGTTGCTTGCTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA