Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagttcactttggacccctgcagcctatagaggcaaaggttttagggtattgaaaattaactcaggcgcttttatgccatcaaactctttcagGCTGGCATCAGAACTGACTCCTCAACATCAATTGAAAGAAGAGGCAGAATCAGTAATGCAGGAGTTCGTGACTTCTGTTCAGTTTACAGCT

Basic information

species Zea mays
transcript GRMZM2G148773_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G148773_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g65330.2 (Oryza sativa), 3'ss of exon 3
gtaaagttcactttggacccctgcagcctatagaggcaaaggttttagggtattgaaaattaactcaggcgcttttatgccatcaaactctttcagGCTGGCATCAGAACTGACTCCTCAACATCAATTGAAAGAAGAGGCAGAATCAGTAATGCAGGAGTTCGTGACTTCTGTTCAGTTTACAGCT
||    |||  |||  ||||||      |||| || ||| | | |  ||      |  ||||| | ||  |||||  ||| |||||| | ||||||| | |||||||||| ||| ||||| ||||| ||||||||||||||||||||||| |||||  | || ||||||| ||||||||  ||||||
gtttgattcgtttttcacccctatgttttataaag-caatgatataggg------agtattaagttag-tgctttgctgc-atcaaaatatttcagGTTTGCATCAGAACGGACACCTCAGCATCACTTGAAAGAAGAGGCAGAATCAGTGATGCAACAATTGGTGACTTGTGTTCAGTGCACAGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttagggtattgaaaattaactcaggcgcttttatgccatcaaactctttcagGCTGGCATCAGAACTGACTCCTCAACATCAATTGAAAGAAGAGGCAGAATCAGTAATGCAGGAGTTCGTGACTTCTGTTCAGTTTACAGCT
                aattaac  putative branch site (score: 2)
                                              ctctttc  putative PPT
         tattgaaaattaact  TA-rich tract