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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaatatcttctcccccgattgattattgcgtttgcgtgtgcttcgggttttagtgcctttttttgtaatgttgtcttcctttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAG

Basic information

species Zea mays
transcript GRMZM2G148130_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G148130_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 3
-----------------gtcaatatcttctcccccgattgattattgcgtttgcgtgtgcttcgggttttagtgcct----ttttttgtaatgttgtcttcctttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAG
                  ||  |||  | |      ||    | ||  ||||| || | || |  |   | |   |      |||  ||    | | |||  |||  || |||| |||||||| |||||||| || |||||||| ||||||||||| ||||| || ||||||||||
gtgggatttcttgccttctctttatactatttatttatactgtgtttagtttgggtatactgcatgcactggaatccaacgctttgggtttgatcgacttgtttttctgtagGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88757761|gb|DY541902.1|DY541902
EST:     CCCATGGAGGCACCTCAG                         GTTATATTTCTGCATCCAGCCCCGATGCATCCACACATTTACAGTAATGGA
genomic: CCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: gi|71427893|gb|DR808943.1|DR808943
EST:     ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG                         GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: gi|211054652|gb|FL411716.1|FL411716
EST:     ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG                         GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAACGGA
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: gi|76292123|gb|DV031691.1|DV031691
EST:     ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG                         GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: gi|86475096|gb|DY241466.1|DY241466
EST:     CCCATGGAGGCACCTCAG                         GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
genomic: CCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: gi|84980323|gb|DW530672.1|DW530672
EST:     ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG                         GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: gi|78115399|gb|DV533787.1|DV533787
EST:     ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG                         GTTATATTTTTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgtgcttcgggttttagtgcctttttttgtaatgttgtcttcctttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAG
                                    ttgtcttcctttgtt  CT-rich tract
                       tttttttgtaatgtt  TA-rich tract