Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taattctgtttcctttatcaattaatttggtgattatcatgacattacattgtttttttcttctgttttttatatatactttccacatcgttcctttcagAAGTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT

Basic information

species Zea mays
transcript GRMZM2G147882_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32924156|gb|CF028968.1|CF028968
EST:     TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGGGGCCTTCTAAAG                         AAGTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGT
genomic: TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAGgtaaagctct ... ttcctttcagAAGTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCAT
EST: gi|32858736|gb|CD998417.1|CD998417
EST:     TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAG                         AAGTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGT
genomic: TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAGgtaaagctct ... ttcctttcagAAGTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCAT
EST: gi|32923806|gb|CF028618.1|CF028618
EST:     TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAG                         AAGTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGT
genomic: TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAGgtaaagctct ... ttcctttcagAAGTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCAT
EST: gi|32924110|gb|CF028922.1|CF028922
EST:     TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAG                         AAGTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGT
genomic: TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAGgtaaagctct ... ttcctttcagAAGTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCAT
EST: gi|32923874|gb|CF028686.1|CF028686
EST:     TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAG                         AAGTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGT
genomic: TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAGgtaaagctct ... ttcctttcagAAGTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCAT
EST: gi|32923638|gb|CF028450.1|CF028450
EST:     TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAG                         AAGTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGT
genomic: TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAGgtaaagctct ... ttcctttcagAAGTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCAT
EST: gi|32923912|gb|CF028724.1|CF028724
EST:     AATCAGTGGCCTTCTAAAG                         AAGTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGT
genomic: AATCAGTGGCCTTCTAAAGgtaaagctct ... ttcctttcagAAGTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCAT
EST: gi|32923708|gb|CF028520.1|CF028520
EST:     TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAG                         AAGTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGT
genomic: TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAGgtaaagctct ... ttcctttcagAAGTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCAT
EST: gi|32924079|gb|CF028891.1|CF028891
EST:     TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAG                         AAGTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGT
genomic: TCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAGgtaaagctct ... ttcctttcagAAGTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacattgtttttttcttctgttttttatatatactttccacatcgttcctttcagAAGTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT
                                          tcgttcctttc  CT-rich tract
       tttttttcttctgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taattctgtttcctttatcaattaatttggtgattatcatgacattacattgtttttttcttctgttttttatatatactttccacatcgttcctttcagAAGTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA