1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ggaggttgtttatactagtgtattgtttagcttttgcagattgtttgtcttttagcttctaatgtatgaaacctattcctcaccttttgttttgcaatagGTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCACGAATCCTTCAACGCCACTTCAAGGGGAAGCCATATTATGTTGATGTAA
species | Zea mays |
transcript | GRMZM2G147721_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAG GTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCAEST: gi|149102315|gb|EE188183.2|EE188183
genomic: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAGgttagatcag ... tttgcaatagGTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCA
EST: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAG GTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCAEST: gi|149081093|gb|EE170194.2|EE170194
genomic: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAGgttagatcag ... tttgcaatagGTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCA
EST: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAG GTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCAEST: gi|148986685|gb|EE030467.2|EE030467
genomic: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAGgttagatcag ... tttgcaatagGTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCA
EST: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAG GTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCAEST: gi|211537181|gb|FL316595.1|FL316595
genomic: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAGgttagatcag ... tttgcaatagGTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCA
EST: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAG GTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCAEST: gi|71437045|gb|DR818095.1|DR818095
genomic: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAGgttagatcag ... tttgcaatagGTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCA
EST: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAG GTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCAEST: gi|211507953|gb|FL346110.1|FL346110
genomic: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAGgttagatcag ... tttgcaatagGTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCA
EST: CAACTCCCAGACACGGCGTGGNCCAACCTTGCTGGTTTAGAGTGCCACAG GTTGGCCTCATTGCTGTNAATGATGGGATTATCCTTTCGCA-TCATATTTCEST: gi|211278408|gb|FL366607.1|FL366607
genomic: CAACTCCCAGACACGGCGTGG-CCAACCTTGCTGGTTTAGAGTGCCACAGgttagatcag ... tttgcaatagGTTGGCCTCATTGCTGTAAATGATGGGATTATCCTT-CGCAATCATATTTC
EST: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGC-ACAG GTTGGCCTCATTGCTGTAAEST: gi|211222998|gb|FL350874.1|FL350874
genomic: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAGgttagatcag ... tttgcaatagGTTGGCCTCATTGCTGTAA
EST: CAACTCCCAGACACGGCGTGGCCAACCTTGCTGGGTTTAGAGTGCCACAG GTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCAEST: gi|148942982|gb|EC888030.2|EC888030
genomic: CAACTCCCAGACACGGCGTGGCCAACCTTGCTGG-TTTAGAGTGCCACAGgttagatcag ... tttgcaatagGTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCA
EST: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAG GTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCAEST: gi|148943253|gb|EC888314.2|EC888314
genomic: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAGgttagatcag ... tttgcaatagGTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCA
EST: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAG GTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCAEST: gi|74235474|gb|DT643388.1|DT643388
genomic: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAGgttagatcag ... tttgcaatagGTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCA
EST: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAG GTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCA
genomic: ACAACTCCCAGACACGGCGTGGCCAACCTTGCTGGTTTAGAGTGCCACAGgttagatcag ... tttgcaatagGTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCA
tgtcttttagcttctaatgtatgaaacctattcctcaccttttgttttgcaatagGTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCACGAATCCTTCAACGCCACTTCAAGGGGAAGCCATATTATGTTGATGTAA
tcctcac putative branch site (score: 42)
cctattcctcaccttt CT-rich tract
ttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaggttgtttatactagtgtattgtttagcttttgcagattgtttgtcttttagcttctaatgtatgaaacctattcctcaccttttgttttgcaatagGTTGGCCTCATTGCTGTAAATGATGGGATTATCCTTCGCAATCATATTTCACGAATCCTTCAACGCCACTTCAAGGGGAAGCCATATTATGTTGATGTAA
- - gttgttt
- - - - - - - - - tgtattg
- - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - -agcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtatg