1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtacagtaacagaacatagatagaagcaaatcaaaggagatgtgctaagattttttttaatgcggtgaaggttgtcataattgttttattttttttctagATGACGATTGCTTTCACTTCTGTCATGGCTATATTCATTATTGAAAGGGTTGATGATAGAGCAGGGGCAAAATCCCTTGCACCACTTGTGATTGCGGGTG
species | Zea mays |
transcript | GRMZM2G147709_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCA ATGACGATTGCTTTCACTTCTGTCATGGCTATATTCATTATTGAAAGGGTTEST: gi|211218284|gb|FL207814.1|FL207814
genomic: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCAgtgagttcct ... ttttttctagATGACGATTGCTTTCACTTCTGTCATGGCTATATTCATTATTGAAAGGGTT
EST: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCA ATGACGATTGCTTTCACEST: gi|211515170|gb|FL354450.1|FL354450
genomic: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCAgtgagttcct ... ttttttctagATGACGATTGCTTTCAC
EST: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCA ATGACGATTGCEST: gi|211166571|gb|FK969119.1|FK969119
genomic: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCAgtgagttcct ... ttttttctagATGACGATTGC
EST: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCA ATGACGATTGCTTTCACTTCTGTCATGGCTATATTCATTATTGAAAGGGGTEST: gi|67012775|gb|CO441524.1|CO441524
genomic: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCAgtgagttcct ... ttttttctagATGACGATTGCTTTCACTTCTGTCATGGCTATATTCATTATTGAAAGGGTT
EST: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCA ATGACGATTGCTTTCACTTCTGTCATGGCTATATTCATTATTGAAAGGGTTEST: gi|211049503|gb|FL332054.1|FL332054
genomic: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCAgtgagttcct ... ttttttctagATGACGATTGCTTTCACTTCTGTCATGGCTATATTCATTATTGAAAGGGTT
EST: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCA ATGACGATTGCTTTCACTTCTGTCAEST: gi|12046333|gb|BF728472.1|BF728472
genomic: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCAgtgagttcct ... ttttttctagATGACGATTGCTTTCACTTCTGTCA
EST: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCA ATGACGATTGCTTTCACTTCTGTCATGGCTATATTCATTATTGAAAGGGTTEST: gi|12045665|gb|BF727804.1|BF727804
genomic: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCAgtgagttcct ... ttttttctagATGACGATTGCTTTCACTTCTGTCATGGCTATATTCATTATTGAAAGGGTT
EST: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCA ATGACGATTGCTTTCACTTCTGTCATGGCTATATTCATTATTGAAAGGGTTEST: gi|78180036|gb|DV550409.1|DV550409
genomic: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCAgtgagttcct ... ttttttctagATGACGATTGCTTTCACTTCTGTCATGGCTATATTCATTATTGAAAGGGTT
EST: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCA ATGACGATTGCTTTCACTTCTGTCATGGCTATATTCATTATTGAAAGGGTT
genomic: ATTATCATCTCAACCCGAATGACGCCACCCTAGTTTGGGACAGACTGCCAgtgagttcct ... ttttttctagATGACGATTGCTTTCACTTCTGTCATGGCTATATTCATTATTGAAAGGGTT
taagattttttttaatgcggtgaaggttgtcataattgttttattttttttctagATGACGATTGCTTTCACTTCTGTCATGGCTATATTCATTATTGAAAGGGTTGATGATAGAGCAGGGGCAAAATCCCTTGCACCACTTGTGATTGCGGGTG
ttttaat putative branch site (score: 26)
ttgttttatttttttt putative PPT
ttgtcataattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtaacagaacatagatagaagcaaatcaaaggagatgtgctaagattttttttaatgcggtgaaggttgtcataattgttttattttttttctagATGACGATTGCTTTCACTTCTGTCATGGCTATATTCATTATTGAAAGGGTTGATGATAGAGCAGGGGCAAAATCCCTTGCACCACTTGTGATTGCGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - -aacagaa
- - - - - - - - - - -agaagca
- - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - tgtgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcggtg