1 5' 3' | 2 5' 3' | 3 5' 3' |
...catgcatttggtctgttggttgaaggattctctgcctacagctttgtttcaccgttttttgcgaactctgtagatggcatttttccttgactactagtagACCAGAACGCCAGTGCGACAGGAGGCGAAGAAGGTGGTGATCGTAAGAAACCTCCAGTAGCTCGTGCAGCAAAGCAGCCTGGGGTTCAGGAGCCCGCCGC
species | Zea mays |
transcript | GRMZM2G147614_T03 |
intron # | 3 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TAACCAAGTTGAGAAGCATYTTATCAGTATCATGCATGGAGTATCTGTCA MCCAGAACGCCAGTGCGACAGGAGGCGAATAAGGTGGTGATCGTAAGAMACEST: gi|17970001|gb|BM276769.1|BM276769
genomic: TAACCAAGTTGAGAAGCATCTTATCAGTATCATGCATGGAGTATCTGTCAgtatcctttt ... ctactagtagACCAGAACGCCAGTGCGACAGGAGGCGAAGAAGGTGGTGATCGTAAGAAAC
EST: TAACCAAGTTGAGAAGCATCTTATCAGTATCATGCATGGAGTATCTGTCA ACCAGAACGCCAGTGCGACAGGAGGCGAAGAAGGTGGTGATCGTAAGAAACEST: gi|17921704|gb|BM259355.1|BM259355
genomic: TAACCAAGTTGAGAAGCATCTTATCAGTATCATGCATGGAGTATCTGTCAgtatcctttt ... ctactagtagACCAGAACGCCAGTGCGACAGGAGGCGAAGAAGGTGGTGATCGTAAGAAAC
EST: ATCTTATCAGTATCATGCATGGAGTATCTGTCA ACCAGAACGCCAGTGCGACAGGAGGCGAAGAAGGTGGTGATCGTAAGAACCEST: gi|86472597|gb|DY238967.1|DY238967
genomic: ATCTTATCAGTATCATGCATGGAGTATCTGTCAgtatcctttt ... ctactagtagACCAGAACGCCAGTGCGACAGGAGGCGAAGAAGGTGGTGATCGTAAGAAAC
EST: TAACCAAGTTGAGAAGCATCTTATCAGTATCATGCATGGAGTTTCTGTCA ACCAGAACGCCAGTGCGACAGGAGGCGAAGAAGGTGGTGATCGTAAGAAAC
genomic: TAACCAAGTTGAGAAGCATCTTATCAGTATCATGCATGGAGTATCTGTCAgtatcctttt ... ctactagtagACCAGAACGCCAGTGCGACAGGAGGCGAAGAAGGTGGTGATCGTAAGAAAC
gtttcaccgttttttgcgaactctgtagatggcatttttccttgactactagtagACCAGAACGCCAGTGCGACAGGAGGCGAAGAAGGTGGTGATCGTAAGAAACCTCCAGTAGCTCGTGCAGCAAAGCAGCCTGGGGTTCAGGAGCCCGCCGC
ttccttgac putative branch site
tttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgcatttggtctgttggttgaaggattctctgcctacagctttgtttcaccgttttttgcgaactctgtagatggcatttttccttgactactagtagACCAGAACGCCAGTGCGACAGGAGGCGAAGAAGGTGGTGATCGTAAGAAACCTCCAGTAGCTCGTGCAGCAAAGCAGCCTGGGGTTCAGGAGCCCGCCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
-atgcatt
- - - - - - -tgttggt
- - - - - - - - - - - - - - - - - -ctacagc