1 5' 3' | 2 5' 3' | 3 5' 3' |
...agtgtttgctttggttcgcaagcggttatcagtgatttgaaagcctccatctatgcccacttcgcctacctagctctgatcctctcaattcaacacacagGCCGACTACAGTATCAAGCATGCTTGTTGTTTTGCTTCAAACCAACACAGAAGCATGGAAGCTGAAAACTCATTGACAACGAATGTATGAGGCACTTAGG
species | Zea mays |
transcript | GRMZM2G147226_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGTGTTGACTGTAAGAGATGATTTTGGGCGGAATGTCCCAAAAAGACTG GCCGACTACAGTATCAAGCATGCTTGTTGTTTTGCTTCAAACCAACACAGAEST: gi|71439110|gb|DR820160.1|DR820160
genomic: GAGTGTTGACTGTAAGAGATGATTTTGGGCGGAATGTCCCAAAAAGACTGgtatgttgta ... caacacacagGCCGACTACAGTATCAAGCATGCTTGTTGTTTTGCTTCAAACCAACACAGA
EST: GAGTGTTGACTGTAAGAGATGATTTTGGGCGGAATGTCCCAAAAAGACTG GCCGACTACAGTATCAAGCATGCTTGTTGTTTTGCTTCAAACCAACACAGAEST: gi|213171842|gb|FM190942.1|FM190942
genomic: GAGTGTTGACTGTAAGAGATGATTTTGGGCGGAATGTCCCAAAAAGACTGgtatgttgta ... caacacacagGCCGACTACAGTATCAAGCATGCTTGTTGTTTTGCTTCAAACCAACACAGA
EST: GAGTGTTGACTGTAAGAGATGATTTTGGGCGGAATGTCCCAAAAAGACTG GCCAACTACAGTATCAAGCATGCTTGTTGTTTTGCTTCAAACCAACTCAGA
genomic: GAGTGTTGACTGTAAGAGATGATTTTGGGCGGAATGTCCCAAAAAGACTGgtatgttgta ... caacacacagGCCGACTACAGTATCAAGCATGCTTGTTGTTTTGCTTCAAACCAACACAGA
tccatctatgcccacttcgcctacctagctctgatcctctcaattcaacacacagGCCGACTACAGTATCAAGCATGCTTGTTGTTTTGCTTCAAACCAACACAGAAGCATGGAAGCTGAAAACTCATTGACAACGAATGTATGAGGCACTTAGG
ctctgat putative branch site (score: 1)
aattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgtttgctttggttcgcaagcggttatcagtgatttgaaagcctccatctatgcccacttcgcctacctagctctgatcctctcaattcaacacacagGCCGACTACAGTATCAAGCATGCTTGTTGTTTTGCTTCAAACCAACACAGAAGCATGGAAGCTGAAAACTCATTGACAACGAATGTATGAGGCACTTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- tgtttgc
- - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatcc