ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

gtgagtcgatcttgctgtgaccccaaatttcattcaggcactgcaccgcccggcccccaccctcaagttcgtttgggggagagggacggttaatctcaacttatgtaacattgacctttcttgtcagtgttatttacttacacccttatattggtttataatgtggggacttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATACTACCATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAA

Basic information

species	Zea mays
transcript	GRMZM2G146677_T01
intron #	3
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G146677_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g14110.1 (Oryza sativa), 3'ss of exon 3

gtgagtcgatcttgctgtgaccccaaatttcattcaggcactgcaccgcccggcccccaccctcaagttcgtttgggggagagggacggttaatctcaacttatgtaacattgacctttcttgtcagtgttatttacttacacccttatattggtttataatgtggggacttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATACTACCATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAA
                                                             ||| |  |  | |||     ||| ||   | ||     ||  |  || ||||       ||  ||   | | |  || |||  || |  |  || | |      |  |||||||||| ||||| || |||||||||||||||||||| || || | ||||||||| || |||||||||||||||||||||||||||||| ||||| ||||| |||| 
------------------------------------------------------------tctctacatgatatggt----aggcacctgtgattcttgctc-tccaatattg-------ttaacatcatcagtatctaacattctaacctcagtgtgt------gtaacttctccagTCATCATAACATTTGGAGGGATGCTCAAGTACCTCAAAGGACATTCACCTATTACCATCCAGAGTCAAGAGGGCTTGATTTCGCAGGACTGATGGATGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|31349057|gb|CD433414.1|CD433414

EST:     ATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACATATCACATTCACATA
genomic: ATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|67018941|gb|CO447690.1|CO447690

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|50328434|gb|CO523560.1|CO523560

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|32935308|gb|CF040120.1|CF040120

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|6022517|gb|AW067550.1|AW067550

EST:     CGNTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|31353240|gb|CD437597.1|CD437597

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|67017765|gb|CO446514.1|CO446514

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|31351617|gb|CD435974.1|CD435974

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|32928193|gb|CF033005.1|CF033005

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACGCCAGCGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|31361066|gb|CD445423.1|CD445423

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|148933542|gb|EC877395.2|EC877395

EST:     CGTTTTTTGCCCGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|31353746|gb|CD438103.1|CD438103

EST:     GTTTTTTGCCGGATTCGCAGATCTACATACCAAC-CCTAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: GTTTTTTGCCGGATTCGCAGATCTACATACCAACACC-AACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|149010059|gb|EE041864.2|EE041864

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|32847461|gb|CD987142.1|CD987142

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|32847350|gb|CD987031.1|CD987031

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|148957409|gb|EC903466.2|EC903466

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|67016435|gb|CO445184.1|CO445184

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|149105256|gb|EE290747.2|EE290747

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|211502931|gb|FL212594.1|FL212594

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|33100140|gb|CF060100.1|CF060100

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|31349528|gb|CD433885.1|CD433885

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|67016081|gb|CO444830.1|CO444830

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|32934615|gb|CF039427.1|CF039427

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|31356230|gb|CD440587.1|CD440587

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|67028302|gb|CO457051.1|CO457051

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|31361600|gb|CD445957.1|CD445957

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|50323492|gb|CO518618.1|CO518618

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|149080001|gb|EE169021.2|EE169021

EST:     CGTTTTTTGCCGGATTCGCATATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|31355562|gb|CD439919.1|CD439919

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|148932842|gb|EE285571.2|EE285571

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|78110052|gb|DV528467.1|DV528467

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|71444529|gb|DR825579.1|DR825579

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|67010595|gb|CO439344.1|CO439344

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|149012758|gb|EE042647.2|EE042647

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|31349323|gb|CD433680.1|CD433680

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|31360383|gb|CD444740.1|CD444740

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|31353745|gb|CD438102.1|CD438102

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|31356425|gb|CD440782.1|CD440782

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|211502932|gb|FL212595.1|FL212595

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|149113112|gb|EE295876.2|EE295876

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|31354884|gb|CD439241.1|CD439241

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|32929962|gb|CF034774.1|CF034774

EST:     CGGTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|148962545|gb|EE013420.2|EE013420

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

EST: gi|149095396|gb|EE181036.2|EE181036

EST:     CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAA                         CCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA
genomic: CGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 58

AGGCGCTTTCAGGCACTGGTGCCTGCCGGCTCTTTGCTGATTTCCAAAAGCGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgat ... acttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATACTACCATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAA

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 187

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 172

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 125

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

tcagtgttatttacttacacccttatattggtttataatgtggggacttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATACTACCATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAA

           tacttac  putative branch site (score: 125)
                                              cttctcc  putative PPT
                      ttatattggtttataa  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtcgatcttgctgtgaccccaaatttcattcaggcactgcaccgcccggcccccaccctcaagttcgtttgggggagagggacggttaatctcaacttatgtaacattgacctttcttgtcagtgttatttacttacacccttatattggtttataatgtggggacttctccagCCATCACAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATACTACCATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG