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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgataacatggaacataacattcgctctctacaacaataagcgctgtagctaaatctaaatatttcttctttccccccaatggttttgcagCTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCTGGATTGCTACAGTTTCCTGAAACCGTCGGATCAACCGTAGTCACTAGTC

Basic information

species Zea mays
transcript GRMZM2G146280_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211107274|gb|FL481514.1|FL481514
EST:     GCATTTGGACATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAG                         CTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCT
genomic: GCATTTGGACATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAGgtgataacat ... ggttttgcagCTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCT
EST: gi|31558433|gb|CD527645.1|CD527645
EST:     GCATTTGGACATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAG                         CTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCT
genomic: GCATTTGGACATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAGgtgataacat ... ggttttgcagCTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCT
EST: gi|149097649|gb|EE183545.2|EE183545
EST:     GCATTTGGACATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAG                         CTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCT
genomic: GCATTTGGACATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAGgtgataacat ... ggttttgcagCTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCT
EST: gi|78082266|gb|DV510678.1|DV510678
EST:     GCATTTGGACATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAG                         CTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCT
genomic: GCATTTGGACATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAGgtgataacat ... ggttttgcagCTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCT
EST: gi|148936699|gb|EC880828.2|EC880828
EST:     GCATTTGGACATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAG                         CTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCT
genomic: GCATTTGGACATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAGgtgataacat ... ggttttgcagCTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCT
EST: gi|60397035|gb|DN229854.1|DN229854
EST:     GCATTTGGACATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAG                         CTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCT
genomic: GCATTTGGACATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAGgtgataacat ... ggttttgcagCTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCT
EST: gi|149099526|gb|EE185564.2|EE185564
EST:     GCATTTGGCCATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAG                         CTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCT
genomic: GCATTTGGACATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAGgtgataacat ... ggttttgcagCTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCT
EST: gi|24766204|gb|CA401359.1|CA401359
EST:     GCATTTGGACATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAG                         CTTCTAC---TG--------ATCCAGTCAACGGAGGAGAAATGCTGCAGCT
genomic: GCATTTGGACATGAGAAGAATACTGTGGCAGTCGTTGGCATGGATGGAAGgtgataacat ... ggttttgcagCTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagcgctgtagctaaatctaaatatttcttctttccccccaatggttttgcagCTTCTACAGATGCCGGTTTGATCCAGTCAACGGAGGAGAAATGCTGCAGCTGGATTGCTACAGTTTCCTGAAACCGTCGGATCAACCGTAGTCACTAGTC
                 atctaaa  putative branch site (score: 3)
              taaatctaaatatttc  TA-rich tract