1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgtccatagtgctctatttcgttgatccaagtcactagtgaaataataactggagtatttcttccaattgactaatatgtgtcagttttcttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGAT
species | Zea mays |
transcript | GRMZM2G146206_T05 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|149095398|gb|EE181040.2|EE181040
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|37361179|gb|CF602468.1|CF602468
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|150037302|gb|DY843516.1|DY843516
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAG-ACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|61118911|gb|DN559872.1|DN559872
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|6021382|gb|AW066310.1|AW066310
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|211332034|gb|FL380493.1|FL380493
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|76928137|gb|DV171503.1|DV171503
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|38568995|gb|CF974880.1|CF974880
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|74242319|gb|DT650233.1|DT650233
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|148995363|gb|EE034577.2|EE034577
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|31351356|gb|CD435713.1|CD435713
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|32915342|gb|CF020154.1|CF020154
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|37361339|gb|CF602628.1|CF602628
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCANAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|211504304|gb|FL391671.1|FL391671
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|31354853|gb|CD439210.1|CD439210
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|32851161|gb|CD990842.1|CD990842
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|211405784|gb|FL400096.1|FL400096
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|38229553|gb|CF919866.1|CF919866
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|211387019|gb|FL373417.1|FL373417
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|110517584|gb|EE022171.1|EE022171
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: CTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|71757929|gb|DR955866.1|DR955866
genomic: CTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: CTGCTGGGTGCGCAAGGGCGGCGCC-TCACCCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|28566674|gb|CB278322.1|CB278322
genomic: CTGCTGGGTGCGCAAGGGCGGCGCCTTCA-CCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCACAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|28576049|gb|CB281941.1|CB281941
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|32909130|gb|CF013942.1|CF013942
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: CCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|71436570|gb|DR817620.1|DR817620
genomic: CCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|211247588|gb|FL403551.1|FL403551
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|33770896|gb|CF273190.1|CF273190
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCANAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|211416108|gb|FL411159.1|FL411159
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|30160504|gb|CB924233.1|CB924233
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|67015285|gb|CO444034.1|CO444034
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|149097486|gb|EE183358.2|EE183358
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|71330645|gb|DR802096.1|DR802096
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCEST: gi|149005099|gb|EE039628.2|EE039628
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
EST: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAG TGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
genomic: GCGCAGAACTGCTGGGTGCGCAAGGGCGGCGCCTTCACCGGCGAGATCAGgttttcttct ... cttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTC
aataactggagtatttcttccaattgactaatatgtgtcagttttcttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGAT
ttttcttgtttc CT-rich tract
tatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtccatagtgctctatttcgttgatccaagtcactagtgaaataataactggagtatttcttccaattgactaatatgtgtcagttttcttgtttcagTGCTGAGATGCTGGTAAACCTGCAGGTGCCCTGGGTCATTTTGGGACATTCTGAGCGCAGAGCTCTGTTGGGTGAATCCAGTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - -tagtgct