1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatagcttcttatgcacgagcaataactgcatgattttttttccacatcgtagatagttgcttccatttgtgtctcccggtattcttgatttacatatcgatatcaatgttcttaattctgctttgtgtatcatttgagatgtgcatggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTGCTGAATTGACAAGGATAATTTATGGAG
species | Zea mays |
transcript | GRMZM2G146206_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|71757929|gb|DR955866.1|DR955866
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|16919933|gb|BM074427.1|BM074427
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|33101583|gb|CF061543.1|CF061543
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|32936387|gb|CF041206.1|CF041206
genomic: ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: CAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTTCAATGTTAGCCCTGCAGTTEST: gi|14243822|gb|BG841520.2|BG841520
genomic: CAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|24767602|gb|CA402746.1|CA402746
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|211116000|gb|FL153558.1|FL153558
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTGGGCTATTGGTACCGGCAAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GGTTCATGATGGTCTGAGAAAAG-GGCTCCACTCCAATGTTAGCCCTGCAGEST: gi|149005098|gb|EE039627.2|EE039627
genomic: TTGGGCTATTGGTACCGGCAAA-GTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagG-TTCATGATGGTCTGAGAAA-GTGGCTCCACTCCAATGTTAGCCCTGCAG
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTTTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|24769561|gb|CA404690.1|CA404690
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|149097485|gb|EE183357.2|EE183357
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|16927318|gb|BM080387.1|BM080387
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|149105683|gb|EE291241.2|EE291241
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|32909130|gb|CF013942.1|CF013942
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|32850309|gb|CD989990.1|CD989990
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|5791027|gb|AI977819.1|AI977819
genomic: ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCCCTCCAATGTTAGCCCTGCAGTTEST: gi|101388915|gb|EB816439.1|EB816439
genomic: TGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTTTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|32931721|gb|CF036533.1|CF036533
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|6012502|gb|AW061939.1|AW061939
genomic: ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|9743048|gb|BE519196.1|BE519196
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|33094011|gb|CF054005.1|CF054005
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|32930797|gb|CF035609.1|CF035609
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|211291624|gb|FL459848.1|FL459848
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|32941523|gb|CF046342.1|CF046342
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|148995362|gb|EE034576.2|EE034576
genomic: ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTTTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|71330644|gb|DR802095.1|DR802095
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|83278303|gb|DV942311.1|DV942311
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|110517584|gb|EE022171.1|EE022171
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|16927255|gb|BM080324.1|BM080324
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|18178250|gb|BM379460.1|BM379460
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|33093246|gb|CF053240.1|CF053240
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|211297519|gb|FL438922.1|FL438922
genomic: ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|31628067|gb|CD526427.1|CD526427
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTEST: gi|110960987|gb|EE181039.1|EE181039
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG GTTCATGATGGTTTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
atcaatgttcttaattctgctttgtgtatcatttgagatgtgcatggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTGCTGAATTGACAAGGATAATTTATGGAG
tcttaat putative branch site (score: 3)
ttcttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagcttcttatgcacgagcaataactgcatgattttttttccacatcgtagatagttgcttccatttgtgtctcccggtattcttgatttacatatcgatatcaatgttcttaattctgctttgtgtatcatttgagatgtgcatggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTGCTGAATTGACAAGGATAATTTATGGAG
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