1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatttcttctgactagagttggtatcctttgttttttgctcttccaattctttgcagtcagttcatgggtcttgtaactgaacagtgtttatttgtatagATCTGCCACCAGATAAAGAGCCTCTTGATTGGAACACACGGATGAAGATAGCTGCAGGTGCAGCTAAGGGCTTAGAACACCTTCATGACAAGGCGAGTCC
species | Zea mays |
transcript | GRMZM2G145709_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATG ATCTGCCACCAGATAAAGAGCCTCTTGATTGGAACACACGGATGAAGATAGEST: gi|76291614|gb|DV031182.1|DV031182
genomic: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtctgtgtat ... atttgtatagATCTGCCACCAGATAAAGAGCCTCTTGATTGGAACACACGGATGAAGATAG
EST: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATG ATCTGCCACCAGATAAAGAGCCTCTTGATTGGAACACACGGATGAAGATAGEST: gi|89758504|gb|DY687662.1|DY687662
genomic: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtctgtgtat ... atttgtatagATCTGCCACCAGATAAAGAGCCTCTTGATTGGAACACACGGATGAAGATAG
EST: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATG ATCTGCCACCAGATAAAGAGCCTCTTGATTGGAACACACGGATGAAGATAGEST: gi|148942135|gb|EC887138.2|EC887138
genomic: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtctgtgtat ... atttgtatagATCTGCCACCAGATAAAGAGCCTCTTGATTGGAACACACGGATGAAGATAG
EST: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATG ATCTGCCACCAAATAAAGAGCCTCTTGATTGEST: gi|148941217|gb|EC886109.2|EC886109
genomic: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtctgtgtat ... atttgtatagATCTGCCACCAGATAAAGAGCCTCTTGATTG
EST: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATG ATCTGCCACCAGATAAAGAGCCTCTTGATTGGAACACACGGATGAAGATAGEST: gi|148938285|gb|EC882589.2|EC882589
genomic: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtctgtgtat ... atttgtatagATCTGCCACCAGATAAAGAGCCTCTTGATTGGAACACACGGATGAAGATAG
EST: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATG ATCTGGCCACCEST: gi|33467045|gb|CF244094.1|CF244094
genomic: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtctgtgtat ... atttgtatagATCTG-CCACC
EST: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATG ATCTGCCACCAGATAAAGAGCCTCTTGATTGGAA
genomic: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtctgtgtat ... atttgtatagATCTGCCACCAGATAAAGAGCCTCTTGATTGGAA
aattctttgcagtcagttcatgggtcttgtaactgaacagtgtttatttgtatagATCTGCCACCAGATAAAGAGCCTCTTGATTGGAACACACGGATGAAGATAGCTGCAGGTGCAGCTAAGGGCTTAGAACACCTTCATGACAAGGCGAGTCC
ttgtaac putative branch site (score: 221)
tttattt putative PPT
tgtttatttgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttcttctgactagagttggtatcctttgttttttgctcttccaattctttgcagtcagttcatgggtcttgtaactgaacagtgtttatttgtatagATCTGCCACCAGATAAAGAGCCTCTTGATTGGAACACACGGATGAAGATAGCTGCAGGTGCAGCTAAGGGCTTAGAACACCTTCATGACAAGGCGAGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - tcttctg
- - - - - - - - - - - - - - - - -ttttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactgaa