Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctgcatttatccttgttgaattatcttcttatgagtcacacttttcatcgatgatctgtgttatatcttgatgctaaaagttactatgttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA

Basic information

species Zea mays
transcript GRMZM2G145280_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 3
ttctgcatttatccttgttgaattatcttcttatgagtcacacttttcatcgatgatctgtgttatatcttgatgctaaaa--gttactatgttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA
    |  |  |       |  || |      | | |   ||| |    ||   |  | | | |  | | ||  ||  | ||   ||  | | |  ||   ||||||  || || || ||||| |||| |||||| ||||| |||||||||||||||||  | |||||    ||  | ||| | |||||||||||||| ||||
gaaagtttagacagcaaatacataaaaactgtgtaaa--acattagaaattcttcctttatatctttttttcctgacagaataattcttttatatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGATCACCGGAGAAAGAATCGTTCTTTGGAGAGTCTGCAGGCCAATGTGCAGA

upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 3
---ttctgcatttatcc-ttgttgaattatcttcttatgagtcacacttttcatcgatgatctgtgttatatcttgatgctaaaagttactatgttg-attgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA
   ||  ||||||||   || |  ||| |   | |  | |     | || |  |    ||| ||| |   || || |||     | |  |||| ||       |||| || || || || || |||||||| ||||| ||||||||| |||||||||| ||||||||||||   ||  | ||  | ||||| || ||||| ||||
attttaagcatttatttattataaaatgaaaatatgctaaacatgagttctgcttttagatatgtttctgatatt-atgt----attctctatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA

upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA16G17370.2 (Glycine max), 3'ss of exon 2
---ttctgcatttatccttgttgaattatcttcttatgagtcacacttttcatcgatgatctgtgttatatcttgatgctaaa--agttactatgttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA
   ||  |     |      |  ||      ||| |    | | |  ||    |     | | | |  | ||||  ||  | |  | ||  | | |  ||   ||||||| || || || ||||| ||||||||||| ||||| |||||||||||||||||| | |||||    ||  | ||| | |||||||||||||| ||||
aagttaagacagcaaatacataaaaaagctgtctaaaacattagaaattcttcc-----tttatatcttttcttcctgacagactaattcttttatatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATCACCGCAGAAAGAATCGTTCTTTGGAGAGTCTGCAGGCCAATGTGCAGA

upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT5G23900.1 (Arabidopsis thaliana), 3'ss of exon 3
ttctgcatttatccttgttgaattatcttcttatgagtcacacttttcatcgatgatctgtgttatatcttgatgctaaaagttactatgt---tgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA
 | || |||  |   | ||   | |   |  || | ||  | || || || ||| ||     | | | ||    | |    | | || | |   |  ||  ||| |||||| |||||||||||| | |||||||| || || ||||||||||||||||| |||||||||   ||  | ||||| || ||| |||||||||| |
gtttggattcttgaatttt---tcaatgttctaagtgtt-ctctctttatagat-attaagatgaaagctcatagttgcttgcttctttttgtttttttttagGTTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCTGTTGATCACCGACGCAAGAACCGTTCTTTGGAGGGTCTTCAGTCCAATGTCCAAA

upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 3
ttctgcatttatccttgttgaattatcttcttatgagtcacacttttcatcgatgatctgtgttatatcttgatgctaaaagttactatg--ttgattg---cagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA
        || |  ||||||| | |  ||     || |     ||   |||| |    ||| | || ||||| ||   |  | |   ||   ||||||     |||||||||| |||||||||||| | || || || ||||||||| ||||||| || || |||||||||  |||  | ||||| || ||  | ||||||||||
-----ttgttgtgattgttgattgaaattggctggatttttctttactatcggtatcatgtttcatttcttgctgaacattgatctgattgtttgattaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACCATCGTCGCAAGAACCGATCTTTGGAGGGTCTTCAAACAAATGTCCAGA

upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 3'ss of exon 3
-ttctgcatttatccttgttgaattatcttcttatgagtcacacttttcatcgatgatctgtgttatatcttgatgctaaaagttactatgttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA
 || ||   | ||   | ||  |  | ||  || | |   |  |   |  |  ||  | |         |   ||  || | | | || |||  ||| ||||  || || || ||||| || |||||||| |||||||||||| |||||||||| || |||| ||||  ||| || ||  | || || || |||||||| |
tttttggtctcattgctttttgacaaccta-ttgttatggaatcccatggtttattctatacaaatctccaaaattttacatgctcctctgtacattccagGTGGCAGGTATTCCAAAAAAACTTGCTCCGACCATTGGTATTGCTGTTGATCATCGTCGCAGGAACCGATCACTAGAAAGTCTCCAAGCTAATGTCCAAA

upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv13s0047g01160.t01 (Vitis vinifera), 3'ss of exon 2
ttctgcatttatccttgttgaattatcttcttatgagtcacacttttcatcgatgatctgtgttat-atcttgatgctaaaagt-tactatgttgattgc-agGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA
 |||| |   ||   | | |   |   || || | |    |  ||||  || |    || |||||| ||  || || ||||  | || | | |||||  | |||| || |||||||||||||| || ||||||||||| || || || |||||||| ||||| ||||||   || || ||| | || || || ||||||||||
-tctgaa--aatttgtttagctctgaatttttgttatctccttttttattctagttcctttgttatgataatggtgttaaatatgtattttattgataaccagGCAGCAGGCATCCCAAAGAAACTGGCTCCAACCATCGGCATATCGGTTGATCATCGCCGTAAGAACCGTTCTCTAGAGAGCCTTCAAGCAAATGTCCAGA

upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S21_106V6.1 (Physcomitrella patens), 3'ss of exon 3
-ttctgcatttatccttgttgaattatcttcttatgagtcacacttttcatcg-atgatctgtgttatatcttgatgctaaaagttac-tatgttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA
 |    |  | |   || ||| |   || |  | |    ||  | |  ||| |  | ||   |        ||  | || |    ||| | | ||||   |||||||| || ||||||||||||||||| || ||||| |||||  ||||||||||||| ||||| ||   || ||| ||  | || ||||  |||||| |  
gtagcactgtcagggtttttggacagtcattgtcttctacattcatggcattgtgtaattcctccctcggttt--ttctgacgactacatgtcttgaac-cagGCTGCCGGTATCCCAAAGAAGCTTGCACCCACCATCGGTATCGCTGTTGATCACCGTCGCAAAAATCGATGCCTGGAAAGTCTTCAGGAGAATGTCAACC

upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 3'ss of exon 3
--ttctgcatttatccttgttgaattatcttcttatgagtcacacttttcatcgatgatctgtgttatatcttgatgctaaaagttactatgttgattgc-agGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA
  |  || | ||     ||| |  ||      || |  ||   |   || || | |  | |    |   |  |  ||   | | | |   ||    || | |||||||||||||||| |||||||||||||| || ||||||||| ||||||| || |||||||||||   ||   | ||| | || ||||  ||  || |  
catgatgaacttgg---tgtagggttccacctttcttggtacgatgatttatggttttttttgtctgggttgttctgacgacaatcaaattgaattttactagGCTGCTGGCATCCCGAAGAAGCTTGCTCCCACTATTGGTATTGCTGTTGACCATCGCCGCAAGAATCGATGTTTGGAGAGTCTTCAGGAGAACATCAATC

upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 3
---ttctgcatttatccttgttgaattat-cttcttatgagtcacacttttcatcgatgatctgtgttatatcttgatgctaaaagttactatgttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA
    ||||| || |   |||  |   ||| | || | || |  |  |   || ||||   |   ||   | || ||||| ||||    | |  |||     ||||||||||||||||||||||||||||| || ||||| || ||  | |||||||| ||||| |||||    | | | ||| | || || |  || ||  |  
gtgatctgcgtt-acaattgaagggatatgcatcctttgggcgaagccgctc-tcgactcttcatga-gtttcctgatgataaattgaattgcgttccac-cagGCTGCTGGCATCCCAAAGAAGCTTGCACCCACCATCGGCATCGCCGTTGATCATCGCCGTAAGAATCGGTGCTTGGAGAGCCTTCAAGAGAACGTTAACC

upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S459_9V6.3 (Physcomitrella patens), 3'ss of exon 2
------------------------------------------------------------------------------ttctgcatttatccttgttgaattatcttcttatgagtcacacttttcatcgatgatctgtgttatatcttgatgc-----taaaagttactatgttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA
                                                                               | |||| |||         ||     |  |||    | |     || | |||   |||| |||  |    | |||       ||   | || ||||| |  ||||||||||| ||||| ||||| ||||| || || ||||||||| ||||||||||| | |||||||||  || | | ||| | || ||||  |||||  |  
gtatgaattcctttgacctcagtataggattttatcattgacaccacttctgtttggttgcgcaatggattagttgtgatttgcacttacatggcggaaagccattagttacagataaagggcttgaacgaatgtctg-gttccactccggtgcatggactaatacttctttgttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGATCACAGACGCAAGAACCGATGCTTGGAGAGCCTTCAGGAGAATGTGAACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101391619|gb|EB817746.1|EB817746
EST:     CAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: CAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211389707|gb|FL262574.1|FL262574
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32836207|gb|CD975885.1|CD975885
EST:     GCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: GCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|74237761|gb|DT645675.1|DT645675
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|5740214|gb|AI947904.1|AI947904
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32849964|gb|CD989645.1|CD989645
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|5343128|gb|AI795538.1|AI795538
EST:     ACAACATGAAGTCAAGGGCTGTGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTGGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32839009|gb|CD978690.1|CD978690
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211441590|gb|FK945757.1|FK945757
EST:     ACAMCATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211389701|gb|FL262568.1|FL262568
EST:     ACAACATGAAGTCAAGAGCTGGGAGAGGGTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60344582|gb|DN211555.1|DN211555
EST:     GTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: GTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|8665447|gb|BE186263.1|BE186263
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211389703|gb|FL262570.1|FL262570
EST:     ACAACATGAAGTCAAGAGCTGGGAGAGGGTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|76292773|gb|DV032341.1|DV032341
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60356573|gb|DN223546.1|DN223546
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|149112712|gb|EE191403.2|EE191403
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|7162564|gb|AW520186.1|AW520186
EST:     AGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: AGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32838732|gb|CD978413.1|CD978413
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60355713|gb|DN222686.1|DN222686
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|91873830|gb|EB403787.1|EB403787
EST:     GGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: GGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211389704|gb|FL262571.1|FL262571
EST:     ACAACATGAAGTCAAGAGCTGGGAGAGGGTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32938543|gb|CF043362.1|CF043362
EST:     TGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: TGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|17930700|gb|BM267660.1|BM267660
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211279209|gb|FL194214.1|FL194214
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211281009|gb|FL194228.1|FL194228
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|71766827|gb|DR964764.1|DR964764
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60396901|gb|DN229720.1|DN229720
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211426206|gb|FL392503.1|FL392503
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|18170890|gb|BM340730.1|BM340730
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211311383|gb|FL406198.1|FL406198
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|15198791|gb|BI423486.1|BI423486
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60348354|gb|DN215327.1|DN215327
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60340124|gb|DN207097.1|DN207097
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211277402|gb|FL194200.1|FL194200
EST:     ACAACATGAAGTCAAGAGCTGGGAGAGGGTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTG-TATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|17929836|gb|BM266796.1|BM266796
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211129397|gb|FL066373.1|FL066373
EST:     ACAACATGAAGTCAAGAGCTGGGAGAGGGTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|29947149|gb|CB816506.1|CB816506
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|8577151|gb|BE129788.1|BE129788
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211271424|gb|FK945754.1|FK945754
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32912483|gb|CF017295.1|CF017295
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|20507588|gb|BQ279696.1|BQ279696
EST:     AGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: AGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211129398|gb|FL066374.1|FL066374
EST:     ACAACATGAAGTCAAGAGCTGGGAGAGGGTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32850142|gb|CD989823.1|CD989823
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTTCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211389705|gb|FL262572.1|FL262572
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211281011|gb|FL194230.1|FL194230
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|18649359|gb|BM498178.1|BM498178
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|28873512|gb|CB329492.1|CB329492
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32927578|gb|CF032390.1|CF032390
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGTTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|71301115|gb|DR786590.1|DR786590
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60340943|gb|DN207916.1|DN207916
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60348724|gb|DN215697.1|DN215697
EST:     GTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: GTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|93014584|gb|EB640104.1|EB640104
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|17930981|gb|BM267941.1|BM267941
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|18170256|gb|BM340096.1|BM340096
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60401554|gb|DN234361.1|DN234361
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211387079|gb|FL262565.1|FL262565
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211122166|gb|FL463022.1|FL463022
EST:     TTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: TTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211281010|gb|FL194229.1|FL194229
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAAACCATTGGTATTTCTGTTGA
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAA-CCATTGGTATTTCTGTTGA
EST: gi|211281012|gb|FL194231.1|FL194231
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211021206|gb|FL445267.1|FL445267
EST:     TACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: TACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211389702|gb|FL262569.1|FL262569
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|89761946|gb|DY689760.1|DY689760
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60400340|gb|DN233147.1|DN233147
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|60337043|gb|DN204016.1|DN204016
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|71300935|gb|DR786496.1|DR786496
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|20208265|gb|BQ134354.1|BQ134354
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|18163553|gb|BM333392.1|BM333392
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|30705140|gb|CD058672.1|CD058672
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32913773|gb|CF018585.1|CF018585
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|33093353|gb|CF053347.1|CF053347
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|78106398|gb|DV524816.1|DV524816
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211281013|gb|FL194232.1|FL194232
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|213171408|gb|FM192327.1|FM192327
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211441593|gb|FK945760.1|FK945760
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|71766826|gb|DR964763.1|DR964763
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|74234821|gb|DT642735.1|DT642735
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|37416945|gb|CF646124.1|CF646124
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAAGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|4776414|gb|AI665417.1|AI665417
EST:     TCAACATGAAGTCAAGGGTTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|32927581|gb|CF032393.1|CF032393
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211211634|gb|FL368405.1|FL368405
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAATAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|17930580|gb|BM267540.1|BM267540
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|18450622|gb|BM428900.1|BM428900
EST:     NCNNCATGAAGTCAAGGGCTGGGAGAGGCTTTNCCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|76931876|gb|DV172886.1|DV172886
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTTTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|113703968|gb|EE681472.1|EE681472
EST:     GGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: GGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|211389706|gb|FL262573.1|FL262573
EST:     ACAACATGAAGTCAAGAGCTGGGAGAGGGTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|74234820|gb|DT642734.1|DT642734
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
EST: gi|7227456|gb|AW566097.1|AW566097
EST:     ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAG                         GCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT
genomic: ACAACATGAAGTCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAAGgtgaagcatt ... ttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatcgatgatctgtgttatatcttgatgctaaaagttactatgttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA
                 ttatatctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttctgcatttatccttgttgaattatcttcttatgagtcacacttttcatcgatgatctgtgttatatcttgatgctaaaagttactatgttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG