1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tattttctttagtaattgaatcgaaacatgcagttttttacttatgattttcttagactggtttgtaaggtaacttttattaacatgtgtattcttgaagGTGTGTTTTCTGGTAACCTTTCTTTGGATATGTCTGAAGAGTCAACATGGAGGATCAGGCGCTATGGATTCTGTGGGATGCGATCAAAGAAG
species | Zea mays |
transcript | GRMZM2G144716_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCCTTAGAAATAACTGATGGCGCTTCAGTTGGAGATACTCCATTAACTG GTGTGTTTTCTGGTAACCTTTCTTTGGATATGTCTGAAGAGTCAACATGGAEST: gi|71429695|gb|DR810745.1|DR810745
genomic: ATCCTTAGAAATAACTGATGGCGCTTCAGTTGGAGATACTCCATTAACTGgtaatagttg ... attcttgaagGTGTGTTTTCTGGTAACCTTTCTTTGGATATGTCTGAAGAGTCAACATGGA
EST: ATCCTTAGAAATAACTGATGGCGCTTCAGTTGGAGATACTCCATTAACTG GTGTGTTTTCTGGTAACCTTTCTTTGGATATGTCTGAAGAGTCAACATGGAEST: gi|78081291|gb|DV509703.1|DV509703
genomic: ATCCTTAGAAATAACTGATGGCGCTTCAGTTGGAGATACTCCATTAACTGgtaatagttg ... attcttgaagGTGTGTTTTCTGGTAACCTTTCTTTGGATATGTCTGAAGAGTCAACATGGA
EST: ATCCTTAGAAATAACTGATGGCGCTTCAGTTGGAGATACTCCATTAACTG GTGTGTTTTCTGGTAACCTTTCTTTGGATATGTCTGAAGAGTCAACATGGAEST: gi|32838973|gb|CD978654.1|CD978654
genomic: ATCCTTAGAAATAACTGATGGCGCTTCAGTTGGAGATACTCCATTAACTGgtaatagttg ... attcttgaagGTGTGTTTTCTGGTAACCTTTCTTTGGATATGTCTGAAGAGTCAACATGGA
EST: ATCCTTAGAAATAACTGATGGCGCTTCAGTTGGAGATACTCCATTAACTG GTGTGTTTTCTGGTAACCTTTCTATGGATATGTCTGAAGAGTCAACATGGAEST: gi|60340500|gb|DN207473.1|DN207473
genomic: ATCCTTAGAAATAACTGATGGCGCTTCAGTTGGAGATACTCCATTAACTGgtaatagttg ... attcttgaagGTGTGTTTTCTGGTAACCTTTCTTTGGATATGTCTGAAGAGTCAACATGGA
EST: AGTTGGAGATACTCCATTAACTG GTGTGTTTTCTGGTAACCTTTCTTTGGATATGTCTGAAGAGTCAACATGGAEST: gi|71429835|gb|DR810885.1|DR810885
genomic: AGTTGGAGATACTCCATTAACTGgtaatagttg ... attcttgaagGTGTGTTTTCTGGTAACCTTTCTTTGGATATGTCTGAAGAGTCAACATGGA
EST: CAGTGGGAGATACTCCATAAACTG GTGTGTTTTCTGGTAACCTTTCTTTGGATATGTCTGAAGAGTCAACATGGA
genomic: CAGTTGGAGATACTCCATTAACTGgtaatagttg ... attcttgaagGTGTGTTTTCTGGTAACCTTTCTTTGGATATGTCTGAAGAGTCAACATGGA
gattttcttagactggtttgtaaggtaacttttattaacatgtgtattcttgaagGTGTGTTTTCTGGTAACCTTTCTTTGGATATGTCTGAAGAGTCAACATGGAGGATCAGGCGCTATGGATTCTGTGGGATGCGATCAAAGAAG
tattaac putative branch site (score: 1)
tattctt putative PPT
taacttttattaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttctttagtaattgaatcgaaacatgcagttttttacttatgattttcttagactggtttgtaaggtaacttttattaacatgtgtattcttgaagGTGTGTTTTCTGGTAACCTTTCTTTGGATATGTCTGAAGAGTCAACATGGAGGATCAGGCGCTATGGATTCTGTGGGATGCGATCAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG