Sequence
atgc intronic sequence ATGC exonic sequencegtatgggttgttccatttgccatttctactatatgtagtatcagcagcatatttgcaatgtcgagatgtgcaattttgttttttttcgtggtgcccatgtactcctgctgacactaaaattatcttgtcagTTTACACGCCGGAGCAGCTGATAGCAAAATACAGCAATTTGGTGTTTGTTCTTTATTGCATGTCATTGGTCTTTGTTGTTGCATTTAACCACTATCTCTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G144254_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 3'ss of exon 6
gtatgggttgttccatttgccatttctactatatgtagtatcagcagcatatttgcaatgtcgagatgtgcaattttgttttttttcgtggtgcccatgtactcctgctgacactaaaattatcttgtcagTTTACACGCCGGAGCAGCTGATAGCAAAATACAGCAATTTGGTGTTTGTTCTTTATTGCATGTCATTGGTCTTTGTTGTTGCATTTAACCACTATCTCTA
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----------------------------aaaaatggagggaggg-agtat-tttataatgtactgcaattttacgttatcttatctca-gttccctgagtgaatattctgatgccataatcatttcaacagTTTACACCCCGGAGCAGCTAGTTGCGAAATACAGCAATTTAGTGTTTGTTCTCTATTGCATGTCACTGGTCTTTGTGGTTGCATTCAATCAGTATCTCTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78022546|gb|DV490933.1|DV490933EST: AGTCTTTGGCAACATCTTCTTAGTATCCTTTGGCAACCATCAATCACCTG TTTACACGCCGGAGCAGCTGATAGCAAAATACAGCAATTTGGTGTTTGTTC
genomic: AGTCTTTGGCAACATCTTCTTAGTATCCTTTGGCAACCATCAATCACCTGgtatgggttg ... atcttgtcagTTTACACGCCGGAGCAGCTGATAGCAAAATACAGCAATTTGGTGTTTGTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttttttttcgtggtgcccatgtactcctgctgacactaaaattatcttgtcagTTTACACGCCGGAGCAGCTGATAGCAAAATACAGCAATTTGGTGTTTGTTCTTTATTGCATGTCATTGGTCTTTGTTGTTGCATTTAACCACTATCTCTA
cactaaa putative branch site (score: 2)
ttatctt CT-rich tract
actaaaattatctt TA-rich tract