Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcataaaagttccgtttccgtttccttaaatgttctgcattgttttcttcgtggcccgcttcaatggctgcatcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAGAGTACAATCGCAGAAGTTGAAGCAGTTGTCAAGCCAGCAGAAGATTAAA

Basic information

species Zea mays
transcript GRMZM2G143627_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143627_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g57150.1 (Oryza sativa), 3'ss of exon 3
gtatggcataaaagttccgtttccgtttccttaaatgttctgcattgttttcttcgtggcccgcttcaatggctgcatcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAGAGTACAATCGCAGAAGTTGAAGCAGTTGTCAAGCCAGCAGAAGATTAAA
|||| | || ||  ||   |||| |    | |  |  ||||||||  |  ||||| |      |  |||    ||     | |||||||||| ||||||| |||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||| || ||||||||| ||||||||| ||
gtatcgtatgaatttt---tttctggcgacatttaaattctgcat-atcctcttcttcagtaaccacaaccattgttctattgcagGCTGAATTGAAGGAATCAAATGAACAAGGTGCTGAGATTGGAGAGGCTGAGAGTACAATCACAGAAGTTGAAGCTGTCGTCAAGCCAACAGAAGATTGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211225468|gb|FL266142.1|FL266142
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|60354548|gb|DN221521.1|DN221521
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211221345|gb|FL266117.1|FL266117
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|60401166|gb|DN233973.1|DN233973
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211062735|gb|FL266085.1|FL266085
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|60393899|gb|DN226769.1|DN226769
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211221337|gb|FL266109.1|FL266109
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|31997738|gb|CD661749.1|CD661749
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211229594|gb|FL266178.1|FL266178
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211227529|gb|FL266159.1|FL266159
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|4730668|gb|AI649834.1|AI649834
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|93016913|gb|EB642433.1|EB642433
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211062727|gb|FL266077.1|FL266077
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|6564227|gb|AW231849.1|AW231849
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAA
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAA
EST: gi|211219269|gb|FL266097.1|FL266097
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211219268|gb|FL266096.1|FL266096
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211221349|gb|FL266121.1|FL266121
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|29945679|gb|CB815762.1|CB815762
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|93016912|gb|EB642432.1|EB642432
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211225464|gb|FL266138.1|FL266138
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAG
EST: gi|211059784|gb|FL266074.1|FL266074
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211225476|gb|FL266150.1|FL266150
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211221344|gb|FL266116.1|FL266116
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|29946713|gb|CB816288.1|CB816288
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211062738|gb|FL266088.1|FL266088
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|31441015|gb|CD510446.1|CD510446
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|29130349|gb|CB381053.1|CB381053
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211227522|gb|FL266152.1|FL266152
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211227528|gb|FL266158.1|FL266158
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211225471|gb|FL266145.1|FL266145
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|5597084|gb|AI891287.1|AI891287
EST:     TGACTTGAAAGCAACCCTG                         GCTGAACTGAAGGAGTCAAATTGAGCAAGGTGCCGAGATTGGAGAAGCTGA
genomic: TGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAA-TGAGCAAGGTGCCGAGATTGGAGAAGCTGA
EST: gi|5740154|gb|AI947844.1|AI947844
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|31406222|gb|CD484954.1|CD484954
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|31611883|gb|CD568505.1|CD568505
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211221346|gb|FL266118.1|FL266118
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211225466|gb|FL266140.1|FL266140
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGG
EST: gi|16917582|gb|BM073352.1|BM073352
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211059783|gb|FL266073.1|FL266073
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|28910142|gb|CB331283.1|CB331283
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|31997740|gb|CD661750.1|CD661750
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211062729|gb|FL266079.1|FL266079
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GSTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211221342|gb|FL266114.1|FL266114
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211219277|gb|FL266105.1|FL266105
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211062731|gb|FL266081.1|FL266081
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211229587|gb|FL266171.1|FL266171
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211227533|gb|FL266163.1|FL266163
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211227523|gb|FL266153.1|FL266153
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211223401|gb|FL266126.1|FL266126
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAG
EST: gi|211229593|gb|FL266177.1|FL266177
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
EST: gi|211227524|gb|FL266154.1|FL266154
EST:     ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTG                         GCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG
genomic: ACTGCCACAAACGACTTGAAACTGCACTGGCTGACTTGAAAGCAACACTGgtatggcata ... atcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatgttctgcattgttttcttcgtggcccgcttcaatggctgcatcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAGAGTACAATCGCAGAAGTTGAAGCAGTTGTCAAGCCAGCAGAAGATTAAA
            attgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggcataaaagttccgtttccgtttccttaaatgttctgcattgttttcttcgtggcccgcttcaatggctgcatcgtcgcagGCTGAACTGAAGGAGTCAAATGAGCAAGGTGCCGAGATTGGAGAAGCTGAGAGTACAATCGCAGAAGTTGAAGCAGTTGTCAAGCCAGCAGAAGATTAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC