1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatgggtgcttgcaccataataatctggaactgaaatatattccttaactctggttattttttatccgggcacactaacaactcctttgttacataacagTGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGAGGACTGGCTTGGAAATCACAACCTGTGGAAAAAGGAGCAAGGTGGATCA
species | Zea mays |
transcript | GRMZM2G143525_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCG TGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGAEST: gi|89756149|gb|DY686295.1|DY686295
genomic: AGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCGgtatgtttag ... tacataacagTGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGA
EST: AGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCG TGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGAEST: gi|71758607|gb|DR956544.1|DR956544
genomic: AGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCGgtatgtttag ... tacataacagTGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGA
EST: AAAATTTGGGGTTGACCG TGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGAEST: gi|93015209|gb|EB640729.1|EB640729
genomic: AAAATTTGGGGTTGACCGgtatgtttag ... tacataacagTGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGA
EST: AGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCG TGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGAEST: gi|71437404|gb|DR818454.1|DR818454
genomic: AGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCGgtatgtttag ... tacataacagTGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGA
EST: AGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCG TGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGAEST: gi|89758511|gb|DY687667.1|DY687667
genomic: AGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCGgtatgtttag ... tacataacagTGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGA
EST: AGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCG TGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGAEST: gi|213188322|gb|FM193827.1|FM193827
genomic: AGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCGgtatgtttag ... tacataacagTGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGA
EST: AGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCG TGTTTGGCATGACACTGCTACCCCTTTNCA-GCAAGTGCTGCAAGAGTTTGEST: gi|50323087|gb|CO518213.1|CO518213
genomic: AGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCGgtatgtttag ... tacataacagTGTTTGGCATGACACTGCTACCCCTTT-CAAGCAAGTGCTGCAAGAGTTTG
EST: AGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCG TGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGA
genomic: AGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCGgtatgtttag ... tacataacagTGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGA
taactctggttattttttatccgggcacactaacaactcctttgttacataacagTGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGAGGACTGGCTTGGAAATCACAACCTGTGGAAAAAGGAGCAAGGTGGATCA
cactaac putative branch site (score: 40)
ctcctttgtt putative PPT
tggttattttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgggtgcttgcaccataataatctggaactgaaatatattccttaactctggttattttttatccgggcacactaacaactcctttgttacataacagTGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGAGGACTGGCTTGGAAATCACAACCTGTGGAAAAAGGAGCAAGGTGGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - tgcttgc
- - - - - - - - - - - - - - aactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaact