1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...taggagaccgtcgtcaactgagttcatcgagtgctatggtgaccccccccccccctgttaacttaatgctgacatggttcacgtgacattaaaattgcagGGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGATTGGGATATGCAACTGA
species | Zea mays |
transcript | GRMZM2G143356_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACAT GGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGAEST: gi|211103676|gb|FL335622.1|FL335622
genomic: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACATgtaagtgctg ... aaaattgcagGGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGA
EST: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACAT GGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCCTTAGCTGAGCGAEST: gi|211203502|gb|FL354146.1|FL354146
genomic: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACATgtaagtgctg ... aaaattgcagGGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGA
EST: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACAT GGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGAEST: gi|148952030|gb|EC897816.2|EC897816
genomic: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACATgtaagtgctg ... aaaattgcagGGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGA
EST: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACAT GGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGAEST: gi|149080754|gb|EE169818.2|EE169818
genomic: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACATgtaagtgctg ... aaaattgcagGGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGA
EST: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACAT GGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGAEST: gi|211283838|gb|FL366656.1|FL366656
genomic: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACATgtaagtgctg ... aaaattgcagGGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGA
EST: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACAT GGATTGGTTTTTCTTTTEST: gi|211019237|gb|FL365611.1|FL365611
genomic: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACATgtaagtgctg ... aaaattgcagGGATTGGTTTTTCTTTT
EST: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACAT GGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGAEST: gi|149075868|gb|EE164419.2|EE164419
genomic: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACATgtaagtgctg ... aaaattgcagGGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGA
EST: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACAT GGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGAEST: gi|211078111|gb|FL332550.1|FL332550
genomic: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACATgtaagtgctg ... aaaattgcagGGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGA
EST: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACAT GGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGA
genomic: TGCCGTTCGGACCTGCCTCCATCATTCTCCACTTCACGACTAGGAGACATgtaagtgctg ... aaaattgcagGGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGA
cccccccccctgttaacttaatgctgacatggttcacgtgacattaaaattgcagGGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGATTGGGATATGCAACTGA
tgctgac putative branch site (score: 2)
acattaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggagaccgtcgtcaactgagttcatcgagtgctatggtgaccccccccccccctgttaacttaatgctgacatggttcacgtgacattaaaattgcagGGATTGGTTTTTCTTTTCAGCATGCTAGGAATTATGCCTTTAGCTGAGCGATTGGGATATGCAACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA