1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gaacacggcattgtagtaaatgctgaaccatgactagagcaatgttgttgaatctcatttagtctgattttttatattatgtaatgtccatatgaatcagGCCTGGTTCAGAGAACTCCCTGAAGGCGTGCTTGACAGGCTTTCACCTGAGCAAGTCCTTCACTGCAACACAGAGGAGCAATGCATTGAGCTCGTGAAGC
species | Zea mays |
transcript | GRMZM2G143253_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAG GCCTGGTTCAGAGAACTCCCTGAAGGCGTGCTTGACAGGCTTTCACCTGAGEST: gi|71446992|gb|DR828042.1|DR828042
genomic: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAGgtatttgaca ... tatgaatcagGCCTGGTTCAGAGAACTCCCTGAAGGCGTGCTTGACAGGCTTTCACCTGAG
EST: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAG GCCTGGTTCAGAGAACTCCCTGAAGGCGTGCTTGACAGGCTTTCACCTGAGEST: gi|76920416|gb|DV168162.1|DV168162
genomic: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAGgtatttgaca ... tatgaatcagGCCTGGTTCAGAGAACTCCCTGAAGGCGTGCTTGACAGGCTTTCACCTGAG
EST: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAG TEST: gi|76920416|gb|DV168162.1|DV168162
genomic: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAGgtatttgaca ... tatgaatcag-
EST: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAG TEST: gi|26558307|gb|CA830542.1|CA830542
genomic: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAGgtatttgaca ... tatgaatcag-
EST: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAG GCCTGGTTCAGAGAACTCCCTGAAGGCGTGCTTGACAGGCTTTCACCTGAGEST: gi|94476795|gb|EB705753.1|EB705753
genomic: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAGgtatttgaca ... tatgaatcagGCCTGGTTCAGAGAACTCCCTGAAGGCGTGCTTGACAGGCTTTCACCTGAG
EST: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAG GCCTGGTTCAGAGAACTCCCTGAAGGCGTGCTTGACAGGCTTTCACCTGAGEST: gi|76014770|gb|DT941940.1|DT941940
genomic: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAGgtatttgaca ... tatgaatcagGCCTGGTTCAGAGAACTCCCTGAAGGCGTGCTTGACAGGCTTTCACCTGAG
EST: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAG GCCTGGTTCAGAGAACTCCCTGAAGGCGTGCTTGACAGGCTTTCACCTGAGEST: gi|50329448|gb|CO524574.1|CO524574
genomic: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAGgtatttgaca ... tatgaatcagGCCTGGTTCAGAGAACTCCCTGAAGGCGTGCTTGACAGGCTTTCACCTGAG
EST: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAG GCCTGGTTCAGAGAACTCCCTGAAGGCGTGCTTGACAGGCTTTCACCTGAG
genomic: GCATCGTGCCTGACGACATCGATGTGCACTGCCTTGCTAGTTTGATCAAGgtatttgaca ... tatgaatcagGCCTGGTTCAGAGAACTCCCTGAAGGCGTGCTTGACAGGCTTTCACCTGAG
tgttgaatctcatttagtctgattttttatattatgtaatgtccatatgaatcagGCCTGGTTCAGAGAACTCCCTGAAGGCGTGCTTGACAGGCTTTCACCTGAGCAAGTCCTTCACTGCAACACAGAGGAGCAATGCATTGAGCTCGTGAAGC
gtctgat putative branch site (score: 4)
atttagtctgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaacacggcattgtagtaaatgctgaaccatgactagagcaatgttgttgaatctcatttagtctgattttttatattatgtaatgtccatatgaatcagGCCTGGTTCAGAGAACTCCCTGAAGGCGTGCTTGACAGGCTTTCACCTGAGCAAGTCCTTCACTGCAACACAGAGGAGCAATGCATTGAGCTCGTGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- -cacggca
- - - - - - - - - - tgctgaa
- - - - - - - - - - - - - -ccatgac
- - - - - - - - - - - - - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattt