1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagcccgcacttgagtctgatcatatcaccaaagttattcatgattgtaaaagggacagtgaggtgcctaatgttggatttgagaacttttagcttgctatgtttcctttttgtccttttaggagattgtaaacttgactaactagattaaactttatcacttttttgcagGCTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAG
species | Zea mays |
transcript | GRMZM2G142984_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTTACCTAGTTGATGCTATTGAGGGTGGAAAAKAACTTATTCAAGCTT GCTTTGTATTTTCAGTTTGGGCATAAAACTGCATAATGGTGATGGATACACEST: gi|60358611|gb|DN225584.1|DN225584
genomic: TGTTTACCTAGTTGATGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTTgtaagcccgc ... ttttttgcagGCTTTGTATTTTCAGTTTGG-CATAAAACTGCATAATG-TGATGGATACAC
EST: TGTTTACCTAGTTGATGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTT GCTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAGEST: gi|211452427|gb|FK953962.1|FK953962
genomic: TGTTTACCTAGTTGATGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTTgtaagcccgc ... ttttttgcagGCTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAG
EST: GTTTTACCTAGTTGATGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTT GCTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAG
genomic: GTTT-ACCTAGTTGATGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTTgtaagcccgc ... ttttttgcagGCTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAG
ttttaggagattgtaaacttgactaactagattaaactttatcacttttttgcagGCTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAG
gactaac putative branch site (score: 1)
ctttatcactttttt putative PPT
attaaactttatcact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcccgcacttgagtctgatcatatcaccaaagttattcatgattgtaaaagggacagtgaggtgcctaatgttggatttgagaacttttagcttgctatgtttcctttttgtccttttaggagattgtaaacttgactaactagattaaactttatcacttttttgcagGCTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA