1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atatccttttttttctttttatgatttgcgctacatttggtcttggttgatttacaatctctgcttatcccttgtgtaacaattgtttgctgatatgcagAGTGGTAACTGTATGGTACATGACATGTTTGGCCATGAGGTTGTGGAGAAAATAAAGGAACAATATTGTGATGCATTTCTAACAGCACACTTTGAGGTCC
species | Zea mays |
transcript | GRMZM2G142836_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gttgatttacaatctctgcttatcccttgtgtaacaattgtttgctgatatgcagAGTGGTAACTGTATGGTACATGACATGTTTGGCCATGAGGTTGTGGAGAAAATAAAGGAACAATATTGTGATGCATTTCTAACAGCACACTTTGAGGTCC
tgctgat putative branch site (score: 15)
tttacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatccttttttttctttttatgatttgcgctacatttggtcttggttgatttacaatctctgcttatcccttgtgtaacaattgtttgctgatatgcagAGTGGTAACTGTATGGTACATGACATGTTTGGCCATGAGGTTGTGGAGAAAATAAAGGAACAATATTGTGATGCATTTCTAACAGCACACTTTGAGGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - -gctacat
- - - - - - - - - - - - - - - - - - - - - ttggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc