1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagccccatacactatgttagcaatcagaagttgaacaggagatcttattggtggcccttttcgaagtgccatggaagggttctttcagatggctcattgctttactatgcagGATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCG
species | Zea mays |
transcript | GRMZM2G142768_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGA GATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCEST: gi|13198669|gb|BG354471.1|BG354471
genomic: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGAgtaagcccca ... tactatgcagGATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGC
EST: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGA GATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCEST: gi|76924731|gb|DV170106.1|DV170106
genomic: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGAgtaagcccca ... tactatgcagGATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGC
EST: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGA GATGTTTGTAGGTTCAGTGAAGAGGCTCAAGEST: gi|78090139|gb|DV518513.1|DV518513
genomic: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGAgtaagcccca ... tactatgcagGATGTTTGTAGGTTCAGTGAAGAGGCTCAAG
EST: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGA GATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCEST: gi|71768772|gb|DR966709.1|DR966709
genomic: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGAgtaagcccca ... tactatgcagGATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGC
EST: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGA GATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCEST: gi|60350167|gb|DN217140.1|DN217140
genomic: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGAgtaagcccca ... tactatgcagGATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGC
EST: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGA GATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCEST: gi|71758859|gb|DR956796.1|DR956796
genomic: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGAgtaagcccca ... tactatgcagGATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGC
EST: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGA GATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCEST: gi|113702671|gb|EE680175.1|EE680175
genomic: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGAgtaagcccca ... tactatgcagGATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGC
EST: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGA GATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCEST: gi|93011702|gb|EB637222.1|EB637222
genomic: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGAgtaagcccca ... tactatgcagGATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGC
EST: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGA GATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCEST: gi|71433959|gb|DR815009.1|DR815009
genomic: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGAgtaagcccca ... tactatgcagGATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGC
EST: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGA GATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCEST: gi|94477809|gb|EB706767.1|EB706767
genomic: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGAgtaagcccca ... tactatgcagGATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGC
EST: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGA GATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGC
genomic: TATGAGGACAGGGACGGGGACTGGATGCTTGTTGGAGATGTTCCCTGGGAgtaagcccca ... tactatgcagGATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGC
ttttcgaagtgccatggaagggttctttcagatggctcattgctttactatgcagGATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCG
ttgcttt CT-rich tract
tttactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccccatacactatgttagcaatcagaagttgaacaggagatcttattggtggcccttttcgaagtgccatggaagggttctttcagatggctcattgctttactatgcagGATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA