Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcgatccatttgatcatgtcatcgtttgcaaattatttctgccatgcttataatagtgctataagtctatagcttacatgcttttttttttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCATACTCCAGGTCAATTGTGGGTGCTTCCTTGGAAGTAATCCAGAAGAAGA

Basic information

species Zea mays
transcript GRMZM2G142640_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G142640_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 4
atcgatccatttgatcatgtcatcgtttgca-aattatttctgccatgcttataatagtgctataagtctatagcttacatgcttt-----tttttttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCATACTCCAGGTCAATTGTGGGTGCTTCCTTGGAAGTAATCCAGAAGAAGA
          |  ||    |     | || | | ||| |  ||| |||  |    |      | |    |   | |||||  ||||     |||| |  | | |||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| |||||||
------atgctcaattccttgtatatatgtacagttagtcatgctatgtattgcttccgatcagataaattctgtttacaccctttcccaattttctgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCATACTCTAGGTCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGA

upper sequence: GRMZM2G142640_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA19G37370.2 (Glycine max), 3'ss of exon 3
--------------------------------------------------------atcgatccatttgatcatgtcatcgtttgcaaattatttctgccatgctta-taatagtgctataagtctatagcttacatgcttttttttt-tgtctgtagGATATCCA------TGCT---GAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCATACTCCAGGTCAATTGTGGGTGCTTCCTTGGAAGTAATCCAGAAGAAGA
                                                        || | | | ||| |    || ||  |    | |       |    |||| | ||||  ||| ||   |  ||   ||  ||  |  || ||| |||   |  |||||| |      ||||   ||||| || | ||||||| | || ||  |||| ||||| ||||| ||||| ||||| |||||  ||||||||||||||||||| ||||
gtgattatttaattgtattattttaaagatgaaacaataaaccaatgagtgaaaatattgttgcctttaacttggttattctacatataaacaggttatggtgctaagtaattctgcaatggttgcatgatttgaattttgattgtttgtgtgcatgtgatatctagGACATTGCTCAAGAAGCTGTGAGGAAGAGGAGACGTGCTGCCAAAAAGCCTTACTCTAGGTCCATTGTTGGTGCGACCTTGGAAGTAATCCAGAAAAAGA

upper sequence: GRMZM2G142640_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 3
------------atcgatccatttgatc-atgtcatcgtttgcaaattatttctgcca--tgcttataatagtgctataagtctatagcttacatgcttttttttttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCATACTCCAGGTCAATTGTGGGTGCTTCCTTGGAAGTAATCCAGAAGAAGA
             ||  |   || ||||  | |  | ||||| |  || ||| |      || |  | ||  || ||  | |||| | ||    || || |||| | |  || || | |        || || || ||||  ||| | || |||||||||||||||||||| ||||| ||||| |||||| ||||||||||||| ||||||||||
gtaaaaaaaaaactcagtaatttggatctgttttgttgtttgtactttgttttttttcattgatcctgatt-tgttaacattctaaaactc---tgtttcttttatagGATGCAGCACAA-------GAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA

upper sequence: GRMZM2G142640_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv16s0100g00650.t01 (Vitis vinifera), 3'ss of exon 2
---------------------------atcgatccatttgat--catgtcatcgtttgcaaat---tatttctgccatgcttataatagtgctataagtctatagcttacatgcttttttttttgtctgt-------agGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCATACTCCAGGTCAATTGTGGGTGCTTCCTTGGAAGTAATCCAGAAGAAGA
                           ||| |  |||||  |  | | | || ||  |  ||     ||||   |        || | ||     ||||   ||  | |  || || ||||||   || |       |||| ||    || ||||| || ||||||| ||||||| || | |||||||||||||| ||||| || ||||||||  | ||||| || || |||||||  |
gtaatcaaattttaaaattgtttggctatcaactcattttttgcctttttattgtgggtgaaagtgcattttcacttctaccctatttgtttgggaagtggctaattcagctgattcttttttctgctctcactttcagGACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCATACTCAAGGTCCATAGTGGGTGCCACATTGGAGGTTATACAGAAGAGAA

upper sequence: GRMZM2G142640_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv13s0074g00140.t01 (Vitis vinifera), 3'ss of exon 3
atcgatc--catttgatcatg--tcatcgtttgcaaattatttctgccatgcttataata-gtgctataagtctatagcttacatgcttttttttttgt-----ctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCATACTCCAGGTCAATTGTGGGTGCTTCCTTGGAAGTAATCCAGAAGAAGA
 | ||    | ||| || ||   ||||   ||| ||| | |            | ||  | ||| |   |   || |  ||   | ||||  | | | |         |||| ||   ||| || || || ||||||||||| || |||||||||||||||| |||||| || || || ||| || ||||||| |  || ||||||| ||
gtggaatgtcttttaatgatacttcattcattgaaaagtttgctatatgcagctgtatcatgtggttggacattacaaattttcttctttcatctatatgcaactcacagGACATAGCTGCGGAGGCTGTGAAGAAGAGGCGTCGTGCCACCAAGAAGCCATTCTCCAGATCCATAGTTGGTACTACCTTGGAGGCGATACAGAAGAGGA

upper sequence: GRMZM2G142640_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv08s0007g04210.t01 (Vitis vinifera), 3'ss of exon 3
atcgatccatttgatcatgtcatcgtttgcaaattatt-tctgccatgc-ttataatagtgctataagtctatagcttacatgcttttttt---tttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCATACTCCAGGTCAATTGTGGGTGCTTCCTTGGAAGTAATCCAGAAGAAGA
     |  || || |   ||||   | || |||  | | ||  | |||  ||||  |  || |   |||   | | ||  |  |  |  ||   ||  |    |||||||   |   || || |||||||||||||| || |||||||| ||||| ||||| ||||| |||||||||||| | ||||| || ||||||||||  |
---tgtatatgtgttttggtcactttctggaaaagaatatccactatggattatgtt--tgttgggagttatttgttttgagtcactaattgggttaatgctcagGATATTGCTCAAGAGGCTGTAAAGAAGAGGCGTCGTGCCACCAAAAAGCCCTACTCTAGGTCCATTGTGGGTGCTACATTGGAGGTTATCCAGAAGAGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9952995|gb|BE639578.1|BE639578
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|5456231|gb|AI833921.1|AI833921
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|67024843|gb|CO453592.1|CO453592
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|24767969|gb|CA403102.1|CA403102
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|60339160|gb|DN206133.1|DN206133
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|211529720|gb|FL481427.1|FL481427
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|78025581|gb|DV493968.1|DV493968
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|60338669|gb|DN205642.1|DN205642
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|16926354|gb|BM079422.1|BM079422
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|86470272|gb|DY236642.1|DY236642
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|211183624|gb|FL445774.1|FL445774
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCMCAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAARAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|211180303|gb|FL410015.1|FL410015
EST:     AGMCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|16137349|gb|BI894214.1|BI894214
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAGGATG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|78077048|gb|DV505482.1|DV505482
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|78027478|gb|DV495865.1|DV495865
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|211257978|gb|FL453225.1|FL453225
EST:     GGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: GGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|76020605|gb|DT947775.1|DT947775
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCCCCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|60346601|gb|DN213574.1|DN213574
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|211508115|gb|FL240712.1|FL240712
EST:     GACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: GACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|32858460|gb|CD998141.1|CD998141
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|211437810|gb|FL445238.1|FL445238
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|211253086|gb|FL453187.1|FL453187
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|32865027|gb|CF004709.1|CF004709
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|211133239|gb|FL429638.1|FL429638
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|211389524|gb|FL368033.1|FL368033
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|21759828|gb|BQ635369.1|BQ635369
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|16137348|gb|BI894213.1|BI894213
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|22819537|gb|BU499627.1|BU499627
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|31360690|gb|CD445047.1|CD445047
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|21760033|gb|BQ635574.1|BQ635574
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|5006228|gb|AI712290.1|AI712290
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|22715310|gb|BU197696.1|BU197696
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|211530300|gb|FL400695.1|FL400695
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|31353813|gb|CD438170.1|CD438170
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTTCAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|15188208|gb|BI417185.1|BI417185
EST:     TGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|60393960|gb|DN226830.1|DN226830
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|32846195|gb|CD985876.1|CD985876
EST:     ACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: ACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|33092120|gb|CF052114.1|CF052114
EST:     GTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: GTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|9952994|gb|BE639577.1|BE639577
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCTCAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|76020606|gb|DT947776.1|DT947776
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|83279343|gb|DV943351.1|DV943351
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|60342152|gb|DN209125.1|DN209125
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|60338815|gb|DN205788.1|DN205788
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|32858470|gb|CD998151.1|CD998151
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|31354798|gb|CD439155.1|CD439155
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|211121965|gb|FL441610.1|FL441610
EST:     GACAGCAATGTACAGGAAGCAGCACAAGARG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: GACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|6526738|gb|AW216019.1|AW216019
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|213178013|gb|FM194374.1|FM194374
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|211170618|gb|FL462186.1|FL462186
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCMCAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAARAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|60345067|gb|DN212040.1|DN212040
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|15177592|gb|BI398531.1|BI398531
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|32847325|gb|CD987006.1|CD987006
EST:     TACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: TACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|211155827|gb|FL453579.1|FL453579
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
EST: gi|60343076|gb|DN210049.1|DN210049
EST:     AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGAAGgtatgtgata ... ttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttataatagtgctataagtctatagcttacatgcttttttttttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCATACTCCAGGTCAATTGTGGGTGCTTCCTTGGAAGTAATCCAGAAGAAGA
                          agcttac  putative branch site (score: 3)
                                  tgcttttttttttgtc  CT-rich tract
                                 atgctttttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atcgatccatttgatcatgtcatcgtttgcaaattatttctgccatgcttataatagtgctataagtctatagcttacatgcttttttttttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCATACTCCAGGTCAATTGTGGGTGCTTCCTTGGAAGTAATCCAGAAGAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG