1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaggggatatattgtcttctatttatattttcttgaaaacagatacaatgtattttatctgcccccttcatttttccatggcagTCTTGAGACCATTCGCCATGTGTCCTTAATCACTATTAAATTGTCAAAGAAGGAGCTGGATACATCATCCCCAGG
species | Zea mays |
transcript | GRMZM2G142111_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCATTGATATAACAGACACTTGGGAGCCATTGGAAGAAGGCCTTGTCAC TCTTGAGACCATTCGCCATGTGTCCTTAATCACTATTAAATTGTCAAAGAAEST: gi|91874466|gb|EB404423.1|EB404423
genomic: TCCATTGATATAACAGACACTTGGGAGCCATTGGAAGAAGGCCTTGTCACgtaaggggat ... tccatggcagTCTTGAGACCATTCGCCATGTGTCCTTAATCACTATTAAATTGTCAAAGAA
EST: TCCATTGATATAACAGACACTTGGGAGCCATTGGAAGAAGGCCTTGTCAC TCTTGAGACCATTCGCCATGTGTCCTTAATCACTATTAAATTGTCAAAGAAEST: gi|71435668|gb|DR816718.1|DR816718
genomic: TCCATTGATATAACAGACACTTGGGAGCCATTGGAAGAAGGCCTTGTCACgtaaggggat ... tccatggcagTCTTGAGACCATTCGCCATGTGTCCTTAATCACTATTAAATTGTCAAAGAA
EST: TCCATTGATATAACAGACACTTGGGAGCCATTGGAAGAAGGCCTTGTCAC TCTTGAGACCATTCGCCATGTGTCCTTAATCACTATTAAATTGTCAAAGAAEST: gi|211038564|gb|FL344525.1|FL344525
genomic: TCCATTGATATAACAGACACTTGGGAGCCATTGGAAGAAGGCCTTGTCACgtaaggggat ... tccatggcagTCTTGAGACCATTCGCCATGTGTCCTTAATCACTATTAAATTGTCAAAGAA
EST: TCCATTGATATAACAGACACTTGGCAGCCATTGGAAGAAGGCCTTGTCAC TCTTGAGACCATTCGCCATGTGTCCTTAATCACTATTAAATTGTCAAAGAAEST: gi|83278985|gb|DV942993.1|DV942993
genomic: TCCATTGATATAACAGACACTTGGGAGCCATTGGAAGAAGGCCTTGTCACgtaaggggat ... tccatggcagTCTTGAGACCATTCGCCATGTGTCCTTAATCACTATTAAATTGTCAAAGAA
EST: TCCATTGATATAACAGACACTTGGGAGCCATTGGAAGAAGGCCTTGTCAC TCTTGAGACCATTCGCCATGTGTCCTTAATCACTATTAAATTGTCAAAGAAEST: gi|211116607|gb|FL350319.1|FL350319
genomic: TCCATTGATATAACAGACACTTGGGAGCCATTGGAAGAAGGCCTTGTCACgtaaggggat ... tccatggcagTCTTGAGACCATTCGCCATGTGTCCTTAATCACTATTAAATTGTCAAAGAA
EST: TCCATTGATATAACAGACACTTGGCAGCCATTGGAAGAAGGCCTTGTCAC TCTTGAGACCATTCGCCATGTGTCCTTAATCACTEST: gi|211401785|gb|FL336222.1|FL336222
genomic: TCCATTGATATAACAGACACTTGGGAGCCATTGGAAGAAGGCCTTGTCACgtaaggggat ... tccatggcagTCTTGAGACCATTCGCCATGTGTCCTTAATCACT
EST: TCCATTGATATAACAGACACTTGGGAGCCATTGGAAGAAGGC-TTGTCAC TCTTGAGACCATTCGCCATGTGTCCTEST: gi|211442303|gb|FL322987.1|FL322987
genomic: TCCATTGATATAACAGACACTTGGGAGCCATTGGAAGAAGGCCTTGTCACgtaaggggat ... tccatggcagTCTTGAGACCATTCGCCATGTGTCCT
EST: TCCATTGATATAACAGACACTTGGCAGCCATTGGAAGAAGGCCTTGTCAC TCTTGAGACCATTCGCCATGTGTCCT
genomic: TCCATTGATATAACAGACACTTGGGAGCCATTGGAAGAAGGCCTTGTCACgtaaggggat ... tccatggcagTCTTGAGACCATTCGCCATGTGTCCT
ttcttgaaaacagatacaatgtattttatctgcccccttcatttttccatggcagTCTTGAGACCATTCGCCATGTGTCCTTAATCACTATTAAATTGTCAAAGAAGGAGCTGGATACATCATCCCCAGG
tattttatctgccccc CT-rich tract
atacaatgtattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggggatatattgtcttctatttatattttcttgaaaacagatacaatgtattttatctgcccccttcatttttccatggcagTCTTGAGACCATTCGCCATGTGTCCTTAATCACTATTAAATTGTCAAAGAAGGAGCTGGATACATCATCCCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA