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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgactggttttgtgtaccgaaatgctatgcgaattatgaatgcttcgtctgagccatgactaatcacattatgctatctggcataatgcagGATTTTGTCGAGTCTTTACTCAGGAAGCGTTTGTGTATGGAACTACCAGACTCAG

Basic information

species Zea mays
transcript GRMZM2G141587_T05
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141587_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 3'ss of exon 3
gtgagtgactggttttgtgtac-cgaaatgctatgcgaattatga----------atgcttcgtctgagccatgactaatcaca----ttatgctatctggcataatgcagGATTTTGTCGAGTCTTTACTCAGGAAGCGTTTGTGTATGGAACTACCAGACTCAG
|||||||      |||||||    || ||| | |  |  || ||           |||    |  |  |   |    | |||||    | |     || ||  ||||||||||||||||||||||| || ||||| ||||||||  | |||||||||||||| |||
gtgagtgggcaagtttgtgtgtgtgacatgatttttgggttttggggtgctagtgatgtaatgattatgttgttcaaagtcacatgaataacttcctccggtgtaatgcagGATTTTGTCGAGTCTGTATTCAGGGAGCGTTTGCATCTGGAACTACCAGACGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93016008|gb|EB641528.1|EB641528
EST:     AGAGGTCGGAGAGGGTGAAGTCCGTGGATCCTGCATCCGACAGAGCCATG                         GATTTTGTCCAGTCTTTACTCCAGGAAGCGTTTGTGTATGGAACTACCAGA
genomic: AGAGGTCGGAGAGGGTGAAGTCCGTGGATC-TGCATCCGACAGAGCCATGgtgagtgact ... cataatgcagGATTTTGTCGAGTCTTTACTC-AGGAAGCGTTTGTGTATGGAACTACCAGA
EST: gi|76282808|gb|DV022376.1|DV022376
EST:     CAGAGGTCGGAGAGGGTGAAGTCCGTGGATCTGCATCCGACAGAGCCATG                         GATTTTGTCGAGTCTTTACTCAGGAAGCGTTTGTGTATGGAACTACCAGAC
genomic: CAGAGGTCGGAGAGGGTGAAGTCCGTGGATCTGCATCCGACAGAGCCATGgtgagtgact ... cataatgcagGATTTTGTCGAGTCTTTACTCAGGAAGCGTTTGTGTATGGAACTACCAGAC
EST: gi|78078423|gb|DV506837.1|DV506837
EST:     CAGAGGTCGGAGAGGGTGAAGTCCGTGGATCTGCATCCGACAGAGCCATG                         GATTTTGTCGAGTCTTTACTCAGGAAGCGTTTGTGTATGGAACTACCAGAC
genomic: CAGAGGTCGGAGAGGGTGAAGTCCGTGGATCTGCATCCGACAGAGCCATGgtgagtgact ... cataatgcagGATTTTGTCGAGTCTTTACTCAGGAAGCGTTTGTGTATGGAACTACCAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaatgcttcgtctgagccatgactaatcacattatgctatctggcataatgcagGATTTTGTCGAGTCTTTACTCAGGAAGCGTTTGTGTATGGAACTACCAGACTCAG
                     gactaat  putative branch site (score: 2)
                             acattat  TA-rich tract