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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caatatgagttagtctcttatctatattcatgttgaacttttgtgcggaataagtgaatattggagttcctttcattaataaccaagtacattcgaatagGGTTCATCATGGCAGGCAAACACATCAAACGGGAGATAATTTTTTGTATGATGAGAAAGTCTTATGCATTGGCTCTAGTAAAAAAAGACCTGTTCTAAAA

Basic information

species Zea mays
transcript GRMZM2G141185_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141185_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g64870.1 (Oryza sativa), 3'ss of exon 5
caatatgagttagtctcttatctatattcatgttgaacttttgtgcggaataagtgaatat-tggagttcctttcattaataaccaagtacattcgaatagGGTTCATCATGGCAGGCAAACACATCAAACGGGAGATAATTTTTTGTATGATGAGAAAGTCTTATGCATTGGCTCTAGTAAAAAAAGACCTGTTCTAAAA
 | |||   | |   | | | ||||  |  |  |   ||  |  |  | || | |  ||||   || |   |  | |   | | ||     |   |   || ||||||||||| |||||||||||| |||  |||||| |||||||||  |||||| ||||| ||||||| |||||||||| ||||||||||||||| |||
-attatagttcacaatttcaactatcattttcatatgctcctagggagtattactctatatgctgaatgtttggcttctgtgatcactggtacctgtgcagAGTTCATCATGGGAGGCAAACACATAAAAGTGGAGATCATTTTTTGTCCGATGAGCAAGTCCTATGCATAGGCTCTAGTAGAAAAAGACCTGTTCTGAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggaataagtgaatattggagttcctttcattaataaccaagtacattcgaatagGGTTCATCATGGCAGGCAAACACATCAAACGGGAGATAATTTTTTGTATGATGAGAAAGTCTTATGCATTGGCTCTAGTAAAAAAAGACCTGTTCTAAAA
                               taataac  putative branch site (score: 1)
                         tttcattaataa  TA-rich tract