1 5' 3' | 2 5' 3' | 3 5' 3' |
...tacatattcttttgctgcttagtcttatataaacatcactctggatatatgttctgaattataagtttggataccttgtttatagtcgacatttttgcagGCTCGTCCTCTATTCAAGGACCGCAGAAAATTCCCTAAAATGGCTGATCCGTCACTTCAGGGCTGTTTCCCCATGAGGGGACTGTATCAAGCTCTAGCTG
species | Zea mays |
transcript | GRMZM2G140590_T06 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCAATTGACAACACAAAACCCCATGGAGAGCAAAACCTAGTTGCATGG GCTCGTCCTCTATTCAAGGACCGCAGAAAATTCCCTAAAATGGCTGATCCGEST: gi|71321773|gb|DR797574.1|DR797574
genomic: AAGCAATTGACAACACAAAACCCCATGGAGAGCAAAACCTAGTTGCATGGgtatgtttgt ... atttttgcagGCTCGTCCTCTATTCAAGGACCGCAGAAAATTCCCTAAAATGGCTGATCCG
EST: AAGCAATTGACAACACAAAACCCCATGGAGAGCAAAACCTAGTTGCATGG GCTCGTCCTCTEST: gi|211457923|gb|FL459105.1|FL459105
genomic: AAGCAATTGACAACACAAAACCCCATGGAGAGCAAAACCTAGTTGCATGGgtatgtttgt ... atttttgcagGCTCGTCCTCT
EST: AAGCAATTGACAACACAAAACCCCATGGAGAGCAAAACCTAGTTGCATGG GCTCGTCCTCTATTCAAGGACCGCAGAAAATTCCCTAAAATGGCTGATCCGEST: gi|194716833|gb|FK933992.1|FK933992
genomic: AAGCAATTGACAACACAAAACCCCATGGAGAGCAAAACCTAGTTGCATGGgtatgtttgt ... atttttgcagGCTCGTCCTCTATTCAAGGACCGCAGAAAATTCCCTAAAATGGCTGATCCG
EST: AAGCAATTGACAACACAAAACCCCATGGAGAGCAAAACCTAGTTGCATGG GCTCGTCCTCTATTCAAGGACCGCAGAAAATTCCCTAAAATGGCTGATCCGEST: gi|71432552|gb|DR813602.1|DR813602
genomic: AAGCAATTGACAACACAAAACCCCATGGAGAGCAAAACCTAGTTGCATGGgtatgtttgt ... atttttgcagGCTCGTCCTCTATTCAAGGACCGCAGAAAATTCCCTAAAATGGCTGATCCG
EST: AAGCAATTGACAACACAAAACCCCATGGAGAGCAAAACCTAGTTGCATGG GCTCGTCCTCTATTCAAGGACCGCAGAAAATTCCCTAAAATGGCTGATCCG
genomic: AAGCAATTGACAACACAAAACCCCATGGAGAGCAAAACCTAGTTGCATGGgtatgtttgt ... atttttgcagGCTCGTCCTCTATTCAAGGACCGCAGAAAATTCCCTAAAATGGCTGATCCG
tatatgttctgaattataagtttggataccttgtttatagtcgacatttttgcagGCTCGTCCTCTATTCAAGGACCGCAGAAAATTCCCTAAAATGGCTGATCCGTCACTTCAGGGCTGTTTCCCCATGAGGGGACTGTATCAAGCTCTAGCTG
cattttt CT-rich tract
tgaattataagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatattcttttgctgcttagtcttatataaacatcactctggatatatgttctgaattataagtttggataccttgtttatagtcgacatttttgcagGCTCGTCCTCTATTCAAGGACCGCAGAAAATTCCCTAAAATGGCTGATCCGTCACTTCAGGGCTGTTTCCCCATGAGGGGACTGTATCAAGCTCTAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT