Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacataacatatttttgttatgcacttaatgatgcaatatctcttaaaatttgttattaccaatatctatttgttaataagatgttgctttttcgcagACACCAGATTTCTTTTTGAAGGGCACCTTACTGTGGGACAGGAACCTCCACCTCCAGCATGGCTTGTTGCCCAGAATTTAACGAGGGAATTGAGCATACT

Basic information

species Zea mays
transcript GRMZM2G140160_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G140160_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os09g26400.1 (Oryza sativa), 3'ss of exon 2
gtacataacatatttttgttatgcactt-aatgatgcaatatctcttaaaa---tttgttattaccaatatctatttgttaataagatgt---tgctttttcgcagACACCAGATTTCTTTTTGAAGGGCACCTTACTGTGGGACAGGAACCTCCACCTCCAGCATGGCTTGTTGCCCAGAATTTAACGAGGGAATTGAGCATACT
       | || | | ||   || | ||   |||   ||  | || | |||   ||     |||  |||||||||||| ||| |||||||      |||||  |||| || |||||||||||||||||||| ||||| |||||||  |||||||||||||| || ||||||||||||||||||||| |  | ||| | |||||  |
------catatttgtctgcagtgtattttggtgaaataaactttccttaaaatattcacccttataaatatctatttgctaagaagatgtaaacttttttttccagATACAAGATTTCTTTTTGAAGGGCATCTTACAGTGGGACCTGAACCTCCACCTCCTGCCTGGCTTGTTGCCCAGAATTTAGCACGAGAACTTAGCATTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaaatttgttattaccaatatctatttgttaataagatgttgctttttcgcagACACCAGATTTCTTTTTGAAGGGCACCTTACTGTGGGACAGGAACCTCCACCTCCAGCATGGCTTGTTGCCCAGAATTTAACGAGGGAATTGAGCATACT
                            tgttaat  putative branch site (score: 3)
                                         ttgctttttc  putative PPT
          ttattaccaatatcta  TA-rich tract