1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgtaagatgcttctgaagttggtgtttgaggatttatttcatgacttgcagaatcctgtaacatctcttagaaatgtctttgttattacaccttcacagATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAAGTGACATTGCACACTTTAGAATCTGAAGGCCAGAAAATGGACAGCATGG
species | Zea mays |
transcript | GRMZM2G139621_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTGGCAAAACG ATTACAAGCCTCTCAAAGAAGACAGTT-GCTTTGCTATGTTTTTGGATGAAEST: gi|211327541|gb|FL256449.1|FL256449
genomic: CCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTGGCAAAACGgtatgatatt ... accttcacagATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAA
EST: CCTGCATCTTTGGAAATTCTGATCGACTTAGGACTCCATTTGGCAAAACG ATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCNATGTNTTTGGATGAAEST: gi|211327539|gb|FL256447.1|FL256447
genomic: CCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTGGCAAAACGgtatgatatt ... accttcacagATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAA
EST: CCTGCATCTTTGGAAATTCTGATCGACTTAGGACTCCATTTGGCAAAACG ATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAAEST: gi|6194524|gb|AW146628.1|AW146628
genomic: CCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTGGCAAAACGgtatgatatt ... accttcacagATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAA
EST: CCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTGGCAAAACG ATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAAEST: gi|86855934|gb|DY306945.1|DY306945
genomic: CCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTGGCAAAACGgtatgatatt ... accttcacagATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAA
EST: CCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTGGCAAAACG ATTACAAGCCTCTCAAAGAAGACAGTT-GCTTTGCTATGTTTTTGGATGAAEST: gi|211327540|gb|FL256448.1|FL256448
genomic: CCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTGGCAAAACGgtatgatatt ... accttcacagATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAA
EST: CCTGCATCTTTGGAAATTCTGATCGACTTAGGACTCCATTTGGCAAAACG ATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAA
genomic: CCTGCATCTTTGGAAATTCTGATCGACTGAGGACTCCATTTGGCAAAACGgtatgatatt ... accttcacagATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAA
cttgcagaatcctgtaacatctcttagaaatgtctttgttattacaccttcacagATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAAGTGACATTGCACACTTTAGAATCTGAAGGCCAGAAAATGGACAGCATGG
ctgtaac putative branch site (score: 174)
caccttc putative PPT
tttgttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtaagatgcttctgaagttggtgtttgaggatttatttcatgacttgcagaatcctgtaacatctcttagaaatgtctttgttattacaccttcacagATTACAAGCCTCTCAAAGAAGACAGTTTGCTTTGCTATGTTTTTGGATGAAGTGACATTGCACACTTTAGAATCTGAAGGCCAGAAAATGGACAGCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - -gcttctg
- - - - - - - - - gttggtg
- - - - - - - - - - - - - - - - - - -tttcatg
- - - - - - - - - - - - - - - - - - - - - - acttgca