1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caagtgcttttggatgtgtatttgtgtgtgtgtgatttaccttttgttttctctaaagcaatcgcatgatgtgcattaaaaaatgtgagagcccttgcagGTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCTGGATGTAGTGGGCTTGACCGCTCATCTGCGGATTACATCGG
species | Zea mays |
transcript | GRMZM2G139462_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTGCTATTGTTGTTGGCGGTGGCAATAEST: gi|211173537|gb|FL094957.1|FL094957
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTTGCTATTGTTGTTGGCGGTGGCAATA
EST: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCTEST: gi|84980665|gb|DW531014.1|DW531014
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCT
EST: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCTEST: gi|76013765|gb|DT940935.1|DT940935
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCT
EST: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCTEST: gi|50338057|gb|CO533183.1|CO533183
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCT
EST: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCTEST: gi|211173536|gb|FL094956.1|FL094956
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCT
EST: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTGCTATTGTTGTTGGCGGTGGCAATATCTTEST: gi|50326142|gb|CO521268.1|CO521268
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTTGCTATTGTTGTTGGCGGTGGCAATATCTT
EST: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCTEST: gi|211175204|gb|FL094961.1|FL094961
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCT
EST: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGEST: gi|211175207|gb|FL094964.1|FL094964
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTT-GCTATTGTTGTTGGCGGTGGCAATATCTTCCGTG
EST: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTGCTATTGTTGTTGGCGGTGGEST: gi|211175211|gb|FL094968.1|FL094968
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTTGCTATTGTTGTTGGCGGTGG
EST: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGEST: gi|86466839|gb|DY233209.1|DY233209
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGG
EST: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCTEST: gi|211175212|gb|FL094969.1|FL094969
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCT
EST: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTGCTATTGTTGTTEST: gi|33467006|gb|CF244055.1|CF244055
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTTGCTATTGTTGTT
EST: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCTEST: gi|86468321|gb|DY234691.1|DY234691
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCT
EST: CAATGGCTATTGCAAGAAAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCTEST: gi|211173532|gb|FL094952.1|FL094952
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCT
EST: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTGCTATTGTTGTTGGCGGTGGCEST: gi|148960321|gb|EE153577.2|EE153577
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTTGCTATTGTTGTTGGCGGTGGC
EST: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG GTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCT
genomic: CAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAGgtgccctcct ... gcccttgcagGTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCT
gttttctctaaagcaatcgcatgatgtgcattaaaaaatgtgagagcccttgcagGTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCTGGATGTAGTGGGCTTGACCGCTCATCTGCGGATTACATCGG
ctctaaa putative branch site (score: 43)
cccttgc putative PPT
attaaaaaatgtga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagtgcttttggatgtgtatttgtgtgtgtgtgatttaccttttgttttctctaaagcaatcgcatgatgtgcattaaaaaatgtgagagcccttgcagGTTGCTATTGTTGTTGGCGGTGGCAATATCTTCCGTGGGGCCTCTTGGGCTGGATGTAGTGGGCTTGACCGCTCATCTGCGGATTACATCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
caagtgc
- - - - - -ggatgtg
- - - - - - - - - - - - - - - tgtgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat