Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatgtcacactgatccaagaaacctgcaaattaaaaggcatatatatatatatgcatgcatacttcgatcactaacaatatttctcctttatttcttcaactttggcttggtgctgcacttcagTCTACCTAG

Basic information

species Zea mays
transcript GRMZM2G139082_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148960407|gb|EE153669.2|EE153669
EST:     GTGGGACAACAGCTGCCGCCGGGAGGGCCAAAGCCGCAAAGGACGGCAAG                         TCTACCTAG
genomic: GTGGGACAACAGCTGCCGCCGGGAGGGCCAAAGCCGCAAAGGACGGCAAGgtatatatgt ... tgcacttcagTCTACCTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactaacaatatttctcctttatttcttcaactttggcttggtgctgcacttcagTCTACCTAG
 cactaac  putative branch site (score: 1)
                  tttatttctt  TA-rich tract