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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA

Basic information

species Zea mays
transcript GRMZM2G138907_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os11g37890.2 (Oryza sativa), 3'ss of exon 3
gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA
             ||||  | ||    ||     | |   ||||  |  | ||||  ||| | ||    |  |||||  |   | | |  | | ||   ||  |||||||||||||||||||||||| |||||||||| || |||||||| ||||||||||| || ||||||||||||||||| || || ||| |||| |||||||| |
-----------gtttctaaactttcccactgatatatgttctgttgcaaa-ttgatatgttaattattgttacaaaacagcactgatttcagtaat---taccttttagCCTCAAGATGCCTATGGCTTGGAAAAACTTGCTACTGAGGAACTGTGCAAGCATTACACAAAGGATTTTGGCATTGAATGTCGGGTTGGCCGCTTTCATA

upper sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv05s0020g04510.t01 (Vitis vinifera), 3'ss of exon 3
gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA
                    || || ||  ||  |   |  | |||  | ||  |  | |   ||        |      |   |  ||| ||  |  ||  | ||||||||||||||||||||||| | || || ||||| ||||||||| | ||||||||||| || ||||| ||||| || ||||| || ||||| || || || |
----------------gtttttcctctaatcttataaaaaatatcagtt-ctaaatatattcatttgaggattattggcataactgatgagctttttgcttttgtttagCCTCAAGATGCCTATGGCTTAGAGAAGCTCGCAACTGAGGAGTTATGCAAGCACTACACTAAGGACTTTGGAATTGAGTGTCGCATTGGACGGTTCCATA

upper sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
lower sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaa-tggtttttactgaactgatgc---ctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA
            | ||| |     | |     |||||   | |   | | || |  | | |||   || || ||    || || ||||    |  |  |    |       |||| |||||||| || |||||||| || || || || |||||||||||||||||||| |  ||||| || ||||| |||||||| || |  ||||| ||||
----------gtcctct-cggccgtgtgtctgcgtgtcgccggctgcttgct-gcaccgcgacgc-cgctgtcactgctgattcttacacctcccaaacgtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA

upper sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S237_14V6.1 (Physcomitrella patens), 3'ss of exon 2
gtttctaataaacttc-tgcatttctttacg----ctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA
         |  |  |  ||| |||| |  |    |  ||||  ||   || | | |   ||| |   |     |     | |||   ||  | |  |    | |   |   |||| |||||||| || || || |||||  | || || |||||| ||||||| || || || ||||| |||||||| |||||||| ||||||||||||||||
--------cagtcgccacgcagttctctgtggtgaccagtgtccgcgaacatccatt---gctttacataatttttttggattgggcattgataagtta---cttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA

upper sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S171_56V6.2 (Physcomitrella patens), 3'ss of exon 2
gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaa---tggttt-ttactga-actgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA
              ||  ||| || |  ||||| |    | ||           |  |    ||||  | |   |||   || | | ||||||| | ||||  |    |   |||| || ||||| |||||||| || ||  | || || ||||||||||| | ||||||||||||||| || ||||| ||||| || |||||||| || ||||
--------------tccacatgtcctggcgctcataagtgatgattgtctgacaatatccatcttgtcaggaataaaacttgatctgttactgacagtgatttccgtgtaacagCCCCAGGATGCTTATGGCCTTGAGAAGTTAGCCACGGAGGAGCTGTGTAGGCACTATACAAAGGACTTCGGCATGGAGTGTCGCATTGGTCGTTTCCACA

upper sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ10353 (Selaginella moellendorffii), 3'ss of exon 2
gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA
                                 || | |      |   |    |   |   |||    |          |     |||||   ||    | |||  |||| |||||||||||||| ||||| || ||    ||||| ||||||||||||||||| || ||||||||||| ||||||||||| ||||| || || ||||
---------------------------------gtatgaaaaagaaaaaaacaaaaaagcttcttttcttttgcggggaat-----ctgaaaaaatttgcactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTATGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA

upper sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ37016 (Selaginella moellendorffii), 3'ss of exon 2
gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA
                                             |  |    ||       | |    |    |  |||   ||    ||||  ||  |   ||  |||| |||||||||||||| ||||| || ||    || || ||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| ||||
-------------------------------------------gtatgtgaaagaaagaaatcctttctttctgatctggaagttctaaaactcttgttttccttgcagCCCCAAGATGCCTATGGGCTGGAGAAGCTGTGCACGGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACA

upper sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ34003 (Selaginella moellendorffii), 3'ss of exon 2
gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA
                                                |     ||  |   | |    |    |  ||    ||    ||||  ||  |   ||  |||| |||||||||||||| ||||| || ||    || || ||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||| ||||
---------------------------------------------gtatgtgaaagaagaaccctttctttctgatctgaaagttctaaaactcttgttttccttgcagCCCCAAGATGCCTATGGGCTGGAGAAGCTGTGCACCGAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACA

upper sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ33664 (Selaginella moellendorffii), 3'ss of exon 2
gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA
                                             |  |    ||       | |    |    |  |||   ||    ||||  ||  |   ||  |||| |||||||||||||| ||||| || ||    || || ||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| ||||
-------------------------------------------gtatgtgaaagaaagaaatcctttctttctgatctggaagttctaaaactcttgttttccttgcagCCCCAAGATGCCTATGGGCTGGAGAAGCTGTGCACCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACA

upper sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ37510 (Selaginella moellendorffii), 3'ss of exon 2
gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtga--cttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA
                                                ||  ||| |   ||  | |    |    |  |||   ||    ||||  ||  |   ||  |||| |||||||||||||| ||||| || ||    || || ||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| ||||
-----------------------------------------------gtatgtgaacgaagaaccctttctttctgatctggaagttgtaaaactcttgttttccttgcagCCCCAAGATGCCTATGGGCTGGAGAAGCTGTGCACCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACA

upper sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ18599 (Selaginella moellendorffii), 3'ss of exon 2
gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA
                                 || | |      |   |    |      |  | |  |       |||    |    ||   |     | |||  |||| |||||||||||||| ||||| || ||    ||||| ||||||||||||||||| || ||||||||||| ||||||||||| ||||| || || ||||
---------------------------------gtatgaaaaagaaaaaaaaaaaaaaaaaaggttcttttcttttgtggggaatctaaaaacaaattgcactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA

upper sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ36458 (Selaginella moellendorffii), 3'ss of exon 2
gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA
                                 || | |      |   |    ||||     || |  | ||        |   |   || ||      | |||  |||| |||||||||||||| ||||| || ||    ||||| ||||||||||||||||| || ||||||||||| ||||||||||| ||||| || || ||||
---------------------------------gtatgaaa-acgaaaaaaaaaagcttc--ttttcttttgcggggaatctgaaaaaaaattg-----cactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA

upper sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ12864 (Selaginella moellendorffii), 3'ss of exon 2
gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA
                                   ||  ||||||  | |    |      |||||   |  |||| |  || ||  | |  || |||    ||| |||||||||||||| ||||| || || || |||   | ||| ||||||||||||||||| || ||||||||||| |||||||||||||||||  | |||||||
-----------------------------------gtatgctgtcttccaagaaaaaaacaacttgtt-tctcaaactttttgtttttca--tgttgctc--tttctagCCTCAAGATGCTTATGGACTAGAGAAGCTCTGCAGTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGAAGATTTCACA

upper sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ19598 (Selaginella moellendorffii), 3'ss of exon 2
gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA
                             |   |    ||     |   |    | ||    ||       |   |||        |||||   ||    | |||  |||| |||||||||||||| ||||| || ||    ||||| ||||||||||||||||| || ||||||||||| ||||||||||| ||||| || || ||||
-----------------------------gtatgaaaaagaaaaaaaaaaaaaaaacttcttctcttttgtggggaat--------ctgaaaaaatttgcactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71318270|gb|DR795899.1|DR795899
EST:     AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAG                         CCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
genomic: AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
EST: gi|148949983|gb|EC895503.2|EC895503
EST:     AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAG                         CCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
genomic: AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
EST: gi|101386394|gb|EB815216.1|EB815216
EST:     AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAG                         CCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGANGAGCTGTGCAAG
genomic: AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
EST: gi|83279229|gb|DV943237.1|DV943237
EST:     AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAG                         CCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
genomic: AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
EST: gi|148945328|gb|EC890545.2|EC890545
EST:     AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAG                         CCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
genomic: AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
EST: gi|148931952|gb|EC875193.2|EC875193
EST:     AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAG                         CCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
genomic: AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
EST: gi|116813381|gb|EC855825.1|EC855825
EST:     AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAG                         CCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
genomic: AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
EST: gi|76287580|gb|DV027148.1|DV027148
EST:     AGCTGGAAACTGTAGTTAGCTTGAAGGAATCCGATGCTTGGCCTGCCGAG                         CCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
genomic: AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
EST: gi|32866083|gb|CF005765.1|CF005765
EST:     AGCTGGAAACTGTAGTTAGCTTGTTTGAGTCCGATGCTTGGCCTGCCGAG                         CCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
genomic: AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
EST: gi|76282746|gb|DV022314.1|DV022314
EST:     AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAG                         CCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
genomic: AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
EST: gi|149071845|gb|EE160234.2|EE160234
EST:     AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAG                         CCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
genomic: AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
EST: gi|78119627|gb|DV538011.1|DV538011
EST:     AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAG                         CCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG
genomic: AGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 26

GTTCTTCTATGCATCAAGTGCCTGCATCTACCCTGAGTTCAAGCAGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 148

GTTCTTCTATGCATCAAGTGCCTGCATCTACCCTGAGTTCAAGCAGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 70

GTTCTTCTATGCATCAAGTGCCTGCATCTACCCTGAGTTCAAGCAGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 67

GTTCTTCTATGCATCAAGTGCCTGCATCTACCCTGAGTTCAAGCAGCTGGAAACTGTAGTTAGCTTGAAGGAGTCCGATGCTTGGCCTGCCGAGgtttctaata ... taatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctgtgacttgcgatggcaaaatggtttttactgaactgatgcctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA
                                          gcctaat  putative branch site (score: 67)
                                                ttttt  CT-rich tract
                                             taattttta  TA-rich tract